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If a system is at thermodynamic equilibrium, an observer cannot tell whether a film of it is being played forward or in reverse: any transition will occur with the same frequency in the forward as in the reverse direction. However, if…

统计力学 · 物理学 2020-07-01 John W. Biddle , Jeremy Gunawardena

Colloidal motors without moving parts can be propelled by self-diffusiophoresis, coupling molecular concentration gradients generated by surface chemical reactions to the velocity slip between solid Janus particles and the surrounding fluid…

统计力学 · 物理学 2021-02-08 Pierre Gaspard , Raymond Kapral

We identify general conditions under which regenerative processes with dependent cycles and cycle lengths are asymptotically independent. The result is applied to various models. In particular, independent L\'evy processes with dependent…

概率论 · 数学 2017-11-22 Royi Jacobovic , Offer Kella

Recent measurements of durations of non-equilibrium processes provide valuable information on microscopic mechanisms and energetics. Comprehensive theory for corresponding experiments so far is well developed for single-particle systems…

统计力学 · 物理学 2020-09-04 David Voráč , Philipp Maass , Artem Ryabov

The article presents new model of equilibrium in open chemical systems suggesting a linear dependence of the reaction shift from equilibrium in presence of the external thermodynamic force. Basic equation of this model contains traditional…

化学物理 · 物理学 2007-05-23 B. Zilbergleyt

Autocatalytic reaction system with a small number of molecules is studied numerically by stochastic particle simulations. A novel state due to fluctuation and discreteness in molecular numbers is found, characterized as extinction of…

生物物理 · 物理学 2007-05-23 Yuichi Togashi , Kunihiko Kaneko

The analysis of dissipation and dephasing in driven mesoscopic devices requires a distinction between two notions of quantum irreversibility. One ("Loschmidt echo") is related to "time reversal", while the other is related to "driving…

介观与纳米尺度物理 · 物理学 2009-11-07 Tsampikos Kottos , Doron Cohen

We have developed a novel method to evaluate the potential profile of a molecular motor at each chemical state from only the probe's trajectory and applied it to a rotary molecular motor F$_1$-ATPase. By using this method, we could also…

生物物理 · 物理学 2012-02-21 Shoichi Toyabe , Hiroshi Ueno , Eiro Muneyuki

Chemical reaction systems operating in nonequilibrium open-system states arise in a great number of contexts, including the study of living organisms, in which chemical reactions, in general, are far from equilibrium. Here we introduce a…

亚细胞过程 · 定量生物学 2007-05-23 Daniel A. Beard , Hong Qian

We report on classical Monte Carlo study of phase transitions and critical behavior of a 2D spin-pseudospin model describing a dilute magnet with competing charge and spin interactions. The static critical exponents of the specific heat and…

统计力学 · 物理学 2021-09-23 D. N. Yasinskaya , V. A. Ulitko , Yu. D. Panov

Scaling analysis exploiting timescale separation has been one of the most important techniques in the quantitative analysis of nonlinear dynamical systems in mathematical and theoretical biology. In the case of enzyme catalyzed reactions,…

定量方法 · 定量生物学 2023-03-21 Justin Eilertsen , Wylie Stroberg , Santiago Schnell

We analyze an autonomous micro-engine as a closed quantum mechanical system, including the work it performs and the fuel it consumes. Our model system shows by example that it is possible to transfer energy steadily and spontaneously…

统计力学 · 物理学 2013-04-12 Lukas Gilz , Eike P. Thesing , James R. Anglin

The Marcus theory expression for the rate of non-adiabatic electron transfer is widely used across a range of physical conditions. Although Marcus theory defines the reorganization energy classically, here we show that the reorganization…

量子物理 · 物理学 2026-04-02 Ethan Abraham , Junghyun Yoon , Troy Van Voorhis , Martin Z. Bazant

The mean first-passage time (MFPT) is one standard measure for the reaction time in thermally activated barrier-crossing processes. While the relationship between MFPTs and phenomenological rate coefficients is known for systems that…

统计力学 · 物理学 2024-03-12 Qingyuan Zhou , Roland R. Netz , Benjamin A. Dalton

A model Hamiltonian for the reaction CH$_4^+ \rightarrow$ CH$_3^+$ + H, parametrized to exhibit either early or late inner transition states, is employed to investigate the dynamical characteristics of the roaming mechanism. Tight/loose…

化学物理 · 物理学 2015-06-18 F. A. L. Mauguière , P. Collins , G. S. Ezra , S. C. Farantos , S. Wiggins

While non-reciprocal couplings are ubiquitous in classical systems, their impact on quantum many-body criticality and entanglement remains largely unexplored. Using exact numerical simulations, we study an interacting fermionic chain…

量子物理 · 物理学 2026-02-06 Rafael D. Soares , Matteo Brunelli , Marco Schirò

We analyse a continuous-time random walk model with stochastic reversals of direction. There is no external potential but the reorientation mechanism generates a non-zero current from asymmetry in the forward and backward waiting-time…

统计力学 · 物理学 2026-02-27 Venkata D. Pamulaparthy , Rosemary J. Harris

Based on the theory of stochastic chemical kinetics, the inherent randomness and stochasticity of biochemical reaction networks can be accurately described by discrete-state continuous-time Markov chains. The analysis of such processes is,…

数值分析 · 数学 2014-10-14 Andreychenko Alexander , Mikeev Linar , Wolf Verena

We study the effect of changes in the parameters of a two-dimensional potential energy surface on the phase space structures relevant for chemical reaction dynamics. The changes in the potential energy are representative of chemical…

动力系统 · 数学 2021-07-28 Wenyang Lyu , Shibabrat Naik , Stephen Wiggins

Non-reciprocal interactions are present in many systems out of equilibrium. The rate of entropy production is a measure that quantifies the time irreversibility of a system, and thus how far it is from equilibrium. In this work, we…

统计力学 · 物理学 2022-11-28 Ziluo Zhang , Rosalba Garcia-Millan