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We develop a new simulation method for multidimensional diffusions with sticky boundaries. The challenge comes from simulating the sticky boundary behavior, for which standard methods like the Euler scheme fail. We approximate the sticky…

概率论 · 数学 2021-07-12 Christian Meier , Lingfei Li , Gongqiu Zhang

Estimating counterfactual outcomes over time has the potential to unlock personalized healthcare by assisting decision-makers to answer ''what-iF'' questions. Existing causal inference approaches typically consider regular, discrete-time…

机器学习 · 计算机科学 2022-06-17 Nabeel Seedat , Fergus Imrie , Alexis Bellot , Zhaozhi Qian , Mihaela van der Schaar

We investigate avascular tumour growth as a two-phase process consisting of cells and liquid. Based on the one-dimensional continuum moving-boundary model formulated by (Byrne, King, McElwain, Preziosi, Applied Mathematics Letters, 2003,…

偏微分方程分析 · 数学 2020-06-24 Andrea Genovese de Oliveira , John R. King

This study performs a large-eddy simulation of turbulent separated and reattached flow in an enlarged annular pipe. A vortex ring is periodically shed from the sudden expansion part. A longitudinal vortex occurs around the vortex ring,…

流体动力学 · 物理学 2022-06-22 Hideki Yanaoka , Naoto Yamada

Endocytosis is a key cellular process involved in the uptake of nutrients, pathogens or the diagnosis and therapy of diseases. Most studies have focused on spherical objects, whereas biologically relevant shapes can be highly anisotropic.…

软凝聚态物质 · 物理学 2023-06-07 Ali Azadbakht , Billie Meadowcroft , Thijs Varkevisser , Andela Saric , Daniela J. Kraft

Initiation and development of a malignant tumor is a complex phenomenon that has critical stages determining its long time behavior. This phenomenon is mathematically described by means of various models: from simple heuristic models to…

种群与进化 · 定量生物学 2020-03-23 Yuri Kozitsky , Krzysztof Pilorz

We investigate the dynamics of a nonlinear system modeling tumor growth with drug application. The tumor is viewed as a mixture consisting of proliferating, quiescent and dead cells as well as a nutrient in the presence of a drug. The…

偏微分方程分析 · 数学 2017-05-23 Donatella Donatelli , Konstantina Trivisa

Microvascular disease is a contributor to persistent pulmonary hypertension in those with chronic thromboembolic pulmonary hypertension (CTEPH). The heterogenous nature of the micro and macrovascular defects motivates the use of…

定量方法 · 定量生物学 2024-06-10 Amirreza Kachabi , Mitchel J. Colebank , Sofia Altieri Correa , Naomi C. Chesler

The simulation of viscoelastic time-evolution problems described by a large number of internal variables and with a large spectrum of relaxation times requires high computational resources for their resolution. Furthermore, the internal…

计算工程、金融与科学 · 计算机科学 2024-08-12 Sebastian Rodriguez , Angelo Pasquale , Jad Mounayer , Diego Canales , Marianne Beringhier , Chady Ghnatios , Amine Ammar , Francisco Chinesta

We consider the problem of the long time dynamics for a diffuse interface model for tumor growth. The model describes the growth of a tumor surrounded by host tissues in the presence of a nutrient and consists in a Cahn-Hilliard-type…

偏微分方程分析 · 数学 2018-10-30 Alain Miranville , Elisabetta Rocca , Giulio Schimperna

Projected entangled pair states (PEPS) on finite two-dimensional lattices are a natural ansatz for representing ground states of local many-body Hamiltonians, as they inherently satisfy the boundary law of entanglement entropy. In this…

强关联电子 · 物理学 2025-05-14 Daniel Alcalde Puente , Erik Lennart Weerda , Konrad Schröder , Matteo Rizzi

We introduce a model for directed percolation with a long-range temporal diffusion, while the spatial diffusion is kept short ranged. In an interpretation of directed percolation as an epidemic process, this non-Markovian modification can…

统计力学 · 物理学 2009-11-11 Andrea Jimenez-Dalmaroni

Quantum graphs model processes in complex systems represented as spatial networks in various fields of natural science and technology. An example is the oscillations of elastic string networks, the nodes of which, besides the continuity…

最优化与控制 · 数学 2024-10-01 Sergey Buterin

Computational modelling is helpful for elucidating the cellular mechanisms driving biological morphogenesis. Previous simulation studies of blood vessel growth based on the Cellular Potts model (CPM) proposed that elongated, adhesive or…

细胞行为 · 定量生物学 2015-09-07 Dimitrios Palachanis , András Szabó , Roeland M. H. Merks

A new simple method for the first order phase transition kinetics is suggested. The metastable phase consumption can be imagined in frames of the modisperse approximation for the distribution of the droplets sizes. In all situations of the…

大气与海洋物理 · 物理学 2007-05-23 V. Kurasov

Interactions between an internal flow and wall deformation occur in many biological systems. Such interactions can involve a complex and rich dynamical behavior and a number of peculiarities which depend on the flow parameter range. The aim…

流体动力学 · 物理学 2019-03-11 Mustapha Amaouche , Giuseppe Di Labbio

In this paper we study a model describing the growth of necrotic tumors in different regimes of vascularisation. The tumor consists of a necrotic core of death cells and a surrounding nonnecrotic shell. The corresponding mathematical…

偏微分方程分析 · 数学 2015-03-17 Joachim Escher , Anca-Voichita Matioc , Bogdan-Vasile Matioc

In the following, we discuss nonlinear simulations of nonlinear dynamical systems, which are applied in technical and biological models. We deal with different ideas to overcome the treatment of the nonlinearities and discuss a novel…

数值分析 · 数学 2014-12-01 Juergen Geiser , Vahid Yaghoubi

In this work we illustrate our novel quantitative simulation approach for dense amorphous polymer systems, as discussed in our previous work[Kulkarni et al., A Novel Approach for Lattice Simulations of Polymer Chains in Dense Amorphous…

软凝聚态物质 · 物理学 2008-05-06 Joydeep Mukherjee , Antony N. Beris

Many dynamical phenomena in complex systems concern spreading that plays out on top of networks with changing architecture over time -- commonly known as temporal networks. A complex system's proneness to facilitate spreading phenomena,…

物理与社会 · 物理学 2022-05-06 Mark M. Dekker , Raoul D. Schram , Jiamin Ou , Debabrata Panja