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A theory of condensation and resolubilization of a dilute DNA solution with growing concentration of multivalent cations, N is suggested. It is based on a new theory of screening of a macroion by multivalent cations, which shows that due to…

软凝聚态物质 · 物理学 2009-10-31 T. T. Nguyen , I. Rouzina , B. I. Shklovskii

The electrodynamic response of DNA in the millimeter wave range is investigated. By performing measurements under a wide range of humidity conditions and comparing the response of single strand DNA and double strand DNA, we show that the…

无序系统与神经网络 · 物理学 2015-06-24 M. Briman , N. P. Armitage , E. Helgren , G. Gruner

The adsorption of DNA or other polyelectrolyte molecules on charged membranes is a recurrent motif in soft matter and bionanotechnological systems. Two typical situations encountered are the deposition of single DNA chains onto substrates…

软凝聚态物质 · 物理学 2016-10-19 Sahin Buyukdagli , Ralf Blossey

An 1d model with time-dependent random hopping is proposed to describe charge transport in DNA. It admits to investigate both diffusion of electrons and their tunneling between different sites in DNA. The tunneling appears to be strongly…

软凝聚态物质 · 物理学 2009-11-07 E. I. Kats , V. V. Lebedev

First principle calculations of charge transfer in DNA molecules are computationally expensive given that charge carriers migrate in interaction with intra- and inter-molecular atomic motion. Screening sequences, e.g. to identify excellent…

介观与纳米尺度物理 · 物理学 2020-12-04 Roman Korol , Dvira Segal

The absorption of ultraviolet light creates excitations in DNA, which subsequently start moving in the helix. Their fate is important for an understanding of photo damage, and is determined by the interplay of electronic couplings between…

化学物理 · 物理学 2015-05-18 Arend G. Dijkstra , Yoshitaka Tanimura

The transfer of electrons and holes along DNA dimers, trimers and polymers is described at the base-pair level, using the relevant on-site energies of the base-pairs and the hopping parameters between successive base-pairs. The temporal and…

生物物理 · 物理学 2014-07-01 Constantinos Simserides

A theory is presented of the longitudinal dispersion of DNA under equilibrium confined in a nanochannel. Orientational fluctuations of the DNA chain build up to give rise to substantial fluctuations of the coil in the longitudinal direction…

软凝聚态物质 · 物理学 2009-11-18 Theo Odijk

Numerous experiments on charge transfer in DNA yield a contradictory picture of the transfer: on the one hand they suggest that it is a very slow process and the charge is almost completely localized on one Watson-Crick pair, but on the…

生物物理 · 物理学 2013-04-22 V. D. Lakhno , V. B. Sultanov

We examine the elastic model of short circular DNA. We obtain analytic expressions for configurations, elastic energy, twist and linking number of our solutions. We find the onset of the plectonemic transition. We suggest ways to use our…

软凝聚态物质 · 物理学 2008-02-03 Boris Fain , Joseph Rudnick

Charge transfer along the base-pair stack in DNA is modeled in terms of thermally-assisted tunneling between adjacent base pairs. Central to our approach is the notion that tunneling between fluctuating pairs is rate-limited by the…

软凝聚态物质 · 物理学 2009-11-07 Maria R. D'Orsogna , Joseph Rudnick

A scheme for computing charge-transfer matrix elements with the linear combination of fragment molecular orbitals and the 'nonempirically tuned range-separated' density functional is presented. It takes account of the self-consistent…

化学物理 · 物理学 2016-04-13 Hirotaka Kitoh-Nishioka , Koji Ando

Information has an entropic character which can be analyzed within the Statistical Theory in molecular systems. R. Landauer and C.H. Bennett showed that a logical copy can be carried out in the limit of no dissipation if the computation is…

生物物理 · 物理学 2012-08-15 J. Ricardo Arias-Gonzalez

By assuming that not only counter-ions but DNA molecules as well are thermally distributed according to a Boltzmann law, we propose a modified Poisson-Boltzmann equation at the classical level as starting point to compute the effects of…

定量方法 · 定量生物学 2015-05-13 Alfredo Iorio , Samik Sen , Siddhartha Sen

We scrutinize the effect of polyvalent ions on polymer-DNA interactions. We extend a recently developed test charge theory to the case of a stiff polymer interacting with a DNA molecule in an electrolyte mixture. The theory accounts for…

软凝聚态物质 · 物理学 2017-03-08 Sahin Buyukdagli

Charge transfer is considered in systems composed of a donor, an acceptor and bridge sites of (AT) nucleotide pairs. For a bridge consisting of 180 (AT) pairs, three cases are dealt with: a uniform case, when all the nucleotides in each…

生物物理 · 物理学 2013-04-22 N. S. Fialko , V. D. Lakhno

We studied the electrical conductivity of DNA samples as function of the number of DNA molecules. We showed that the insulating gap (no current at low voltage) increases from ~1-2 V for bundles and large ropes to ~4-7 V for few DNA…

软凝聚态物质 · 物理学 2007-05-23 Thomas Heim , Dominique Deresemes , Dominique Vuillaume

We call {\it monomer} a B-DNA base-pair and examine, analytically and numerically, electron or hole oscillations in monomer- and dimer-polymers, i.e., periodic sequences with repetition unit made of one or two monomers. We employ a…

Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (i.e. rarely accessed), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

图像与视频处理 · 电气工程与系统科学 2023-05-11 Xavier Pic , Eva Gil San Antonio , Melpomeni Dimopoulou , Marc Antonini

The dependence of DNA assemblies conductance on relative humidity is investigated theoretically. Following earlier suggestions, we consider the ionic conductivity through the layers of water adsorbed by DNA molecules. The increase in…

化学物理 · 物理学 2015-05-14 J. M. Leveritt , S. Tesar , C. Dibaya , R. Shrestha , A. L. Burin