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Functional brain networks exhibit topological structures that reflect neural organization; however, statistical comparison of these networks is challenging for several reasons. This paper introduces a topologically invariant permutation…

神经元与认知 · 定量生物学 2025-12-30 Sixtus Dakurah

Long lived topological features are distinguished from short lived ones (considered as topological noise) in simplicial complexes constructed from complex networks. A new topological invariant, persistent homology, is determined and…

数学物理 · 物理学 2009-11-13 Danijela Horak , Slobodan Maletic , Milan Rajkovic

Characterizing the structural properties of neural networks is crucial yet poorly understood, and there are no well-established similarity measures between networks. In this work, we observe that neural networks can be represented as…

This work introduces a novel framework for testing topological variability in weighted networks by combining Hodge decomposition with Wasserstein variance minimization. Traditional approaches that analyze raw edge weights are susceptible to…

定量方法 · 定量生物学 2025-11-18 Sixtus Dakurah

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

神经元与认知 · 定量生物学 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Persistent homology (PH) characterizes the shape of brain networks through the persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

统计方法学 · 统计学 2023-11-06 Yuan Wang , Jian Yin , Rutvik H. Desai

This paper surveys various distance measures for networks and graphs that were introduced in persistent homology. The scope of the paper is limited to network distances that were actually used in brain networks but the methods can be easily…

定量方法 · 定量生物学 2017-07-13 Hyekyoung Lee , Zhiwei Ma , Yuan Wang , Moo K. Chung

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

统计力学 · 物理学 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Understanding the common topological characteristics of the human brain network across a population is central to understanding brain functions. The abstraction of human connectome as a graph has been pivotal in gaining insights on the…

定量方法 · 定量生物学 2023-04-26 Soumya Das , D. Vijay Anand , Moo K. Chung

Complex systems in the real world can be modeled as a network of connected components. The human brain, as a network of neurons among which the interactions cause perception, is a complex network. Synchronization is a dynamical phenomenon…

生物物理 · 物理学 2019-04-30 Arefeh Mazarei , Mohammad Amirian Matlob , Gholamhossein Riazi , Yousef Jamali

The closed loops or cycles in a brain network embeds higher order signal transmission paths, which provide fundamental insights into the functioning of the brain. In this work, we propose an efficient algorithm for systematic identification…

神经元与认知 · 定量生物学 2023-01-04 D. Vijay Anand , Moo K. Chung

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

代数拓扑 · 数学 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

A geometric entropy is defined as the Riemannian volume of the parameter space of a statistical manifold associated with a given network. As such it can be a good candidate for measuring networks complexity. Here we investigate its ability…

数学物理 · 物理学 2017-12-20 D. Felice , R. Franzosi , S. Mancini , M. Pettini

Mild cognitive impairment (MCI) is characterized by subtle changes in cognitive functions, often associated with disruptions in brain connectivity. The present study introduces a novel fine-grained analysis to examine topological…

计算机视觉与模式识别 · 计算机科学 2024-08-29 Ninad Aithal , Debanjali Bhattacharya , Neelam Sinha , Thomas Gregor Issac

Understanding the structure of the brain, and how it changes with time and disease, is a core goal of structural neuroimaging. Contemporary approaches to structural brain analysis are dominated by voxel-wise, mass-univariate methods such as…

代数拓扑 · 数学 2026-04-28 Donato Quiccione , Mariam Pirashvili , Nathan Broomhead , Sean J. Fallon

We use methods from computational algebraic topology to study functional brain networks, in which nodes represent brain regions and weighted edges encode the similarity of fMRI time series from each region. With these tools, which allow one…

定量方法 · 定量生物学 2020-08-27 Bernadette J. Stolz , Tegan Emerson , Satu Nahkuri , Mason A. Porter , Heather A. Harrington

Persistent homology is a fundamental tool in topological data analysis; however, it lacks methods to quantify the fragility or fineness of cycles, anticipate their formation or disappearance, or evaluate their stability beyond persistence.…

Persistent homology has been studied to better understand the structural properties and topology features of weighted networks. It can reveal hidden layers of information about the higher-order structures formed by non-pairwise interactions…

组合数学 · 数学 2025-06-25 Udit Raj , Slobodan Maletić , Sudeepto Bhattacharya

Persistent homology (PH) characterizes the shape of brain networks through persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

Brain network topology, derived from functional magnetic resonance imaging (fMRI), holds promise for improving Alzheimer's disease (AD) diagnosis. Current methods primarily focus on lower-order topological features, often overlooking the…

几何拓扑 · 数学 2025-09-19 Dengyi Zhao , Shanyong Li , Yunping Wang , Chenfei Wang , Zhiheng Zhou , Guiying Yan , Xingqin Qi
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