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[Background] Several studies have mentioned network modularity -- that a network can easily be decomposed into subgraphs that are densely connected within and weakly connected between each other -- as a factor affecting metabolic…

分子网络 · 定量生物学 2012-10-10 Petter Holme

Recent progress on studies of the nanoscale mechanical responses in disordered systems has highlighted a strong degree of heterogeneity in the elastic moduli. In this contribution, using computer simulations, we study the elastic…

软凝聚态物质 · 物理学 2016-02-12 Hideyuki Mizuno , Leonardo E. Silbert , Matthias Sperl

A law previously found for shear moduli of crystalline materials is developed and extended to all elastic moduli in solids and structures. Shear moduli were previously shown to depend only on specific volume. The bulk moduli of many…

材料科学 · 物理学 2023-11-15 S. J. Burns , Sean P. Burns

The rapid compaction of granular media results in localized heating that can induce chemical reactions, phase transformations, and melting. However, there are numerous mechanisms in play that can be dependent on a variety of microstructural…

软凝聚态物质 · 物理学 2023-05-16 Brenden W Hamilton , Timothy C. Germann

We investigate the system size dependent rheological response of branched type I collagen gels. When subjected to a shear strain, the highly interconnected mesh dynamically reorients, resulting in overall stiffening of the network. When a…

软凝聚态物质 · 物理学 2015-05-19 Richard C. Arevalo , Jeffrey S. Urbach , Daniel L. Blair

During the last decade, network approaches became a powerful tool to describe protein structure and dynamics. Here we review the links between disordered proteins and the associated networks, and describe the consequences of local,…

Shearing stresses can change the volume of a material via a nonlinear effect known as shear dilatancy. We calculate the elastic dilatancy coefficient of soft sphere packings and random spring networks, two canonical models of marginal…

软凝聚态物质 · 物理学 2016-07-06 Brian P. Tighe

The equilibrium amorphous solid state -- formed, e.g., by adequately randomly crosslinking the constituents of a macromolecular fluid -- is a heterogeneous state characterized by a universal distribution of particle localization lengths.…

软凝聚态物质 · 物理学 2023-01-04 Boli Zhou , Rafael Hipolito , Paul M. Goldbart

When elastic solids are sheared, a nonlinear effect named after Poynting gives rise to normal stresses or changes in volume. We provide a novel relation between the Poynting effect and the microscopic Gr\"uneisen parameter, which quantifies…

软凝聚态物质 · 物理学 2018-04-16 Karsten Baumgarten , Brian P. Tighe

Soft particulate gels can reversibly yield when sufficient deformation is applied, and the characteristics of this transition can be enhanced or limited by designing hybrid hydrogel composites. While the microscopic dynamics and macroscopic…

软凝聚态物质 · 物理学 2022-11-09 Gavin J. Donley , Minaspi Bantawa , Emanuela Del Gado

This Letter is motivated by some recent experiments on pan-cake shaped nano-samples of metallic glass that indicate a decline in the measured shear modulus upon decreasing the sample radius. Similar measurements on crystalline samples of…

软凝聚态物质 · 物理学 2014-06-30 Yossi Cohen , Itamar Procaccia

The presence of a dispersed phase substantially modifies small-scale turbulence. However, there has not been a comprehensive mechanistically-based understanding to predict turbulence modulation. Based on the energy flux balance, we propose…

流体动力学 · 物理学 2023-11-23 S. Balachandar , C. Peng , L. -P. Wang

Disordered spring networks that are undercoordinated may abruptly rigidify when sufficient strain is applied. Since the deformation in response to applied strain does not change the generic quantifiers of network architecture - the number…

软凝聚态物质 · 物理学 2017-11-29 Mathijs F. J. Vermeulen , Anwesha Bose , Cornelis Storm , Wouter G. Ellenbroek

We study the elasticity of thermalized spring networks under an applied bulk strain. The networks considered are sub-isostatic random-bond networks that, in the athermal limit, are known to have vanishing bulk and linear shear moduli at…

软凝聚态物质 · 物理学 2015-10-28 Manon C. Wigbers , Fred C. MacKintosh , Matthew Dennison

Biological systems (among others) may respond to a large variety of distinct external stimuli, or signals. These perturbations will generally be presented to the system not singly, but in various combinations, so that a proper understanding…

定量方法 · 定量生物学 2011-06-24 Dennis Wylie

We investigate the role of connection density in an adaptive network model of chaotic units that dynamically rewire based on their internal states and local coherence. By systematically varying the network's connectivity density, we uncover…

适应与自组织系统 · 物理学 2025-08-19 Ramiro Plüss , Pablo Martín Gleiser

Open cellular solids usually possess random microstructures that may contain a characteristic length scale, such as the cell size. This gives rise to size dependent mechanical properties where large systems behave differently from small…

材料科学 · 物理学 2018-01-03 Stefan Liebenstein , Stefan Sandfeld , Michael Zaiser

We present a novel approach to understand geometric-incompatibility-induced rigidity in under-constrained materials, including sub-isostatic 2D spring networks and 2D and 3D vertex models for dense biological tissues. We show that in all…

软凝聚态物质 · 物理学 2023-01-18 Matthias Merkel , Karsten Baumgarten , Brian P. Tighe , M. Lisa Manning

We reveal significant qualitative differences in the rigidity transition of three types of disordered network materials: randomly diluted spring networks, jammed sphere packings, and stress-relieved networks that are diluted using a…

软凝聚态物质 · 物理学 2015-04-13 Wouter G. Ellenbroek , Varda F. Hagh , Avishek Kumar , M. F. Thorpe , Martin van Hecke

States of self stress, organizations of internal forces in many-body systems that are in equilibrium with an absence of external forces, can be thought of as the constitutive building blocks of the elastic response of a material. In…

软凝聚态物质 · 物理学 2016-01-15 Daniel M. Sussman , Carl P. Goodrich , Andrea J. Liu