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In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…

定量方法 · 定量生物学 2022-10-18 August George , Doo Nam Kim , Trevor Moser , Ian T. Gildea , James E. Evans , Margaret S. Cheung

Let $\Gamma$ be a rooted tree and let $t$ be a positive integer. We study algebraic invariants and properties of the path ideal generated by monomial corresponding to paths of length $(t-1)$ in $\Gamma$. In particular, we give a recursive…

交换代数 · 数学 2011-06-07 Rachelle R. Bouchat , Huy Tai Ha , Augustine O'Keefe

We propose a new topological invariant of unlabeled trees of N nodes. The invariant is a set of Nx2 matrices of integers, with sum_j k^{d_{i,j}} and v_i as the matrix elements, where d_{i,j} are the elements of the distance matrix and v_i…

统计力学 · 物理学 2007-05-23 S. Piec , K. Malarz , K. Kulakowski

The overlap graphs of subtrees in a tree (SOGs) generalise many other graphs classes with set representation characterisations. The complexity of recognising SOGs in open. The complexities of recognising many subclasses of SOGs are known.…

计算复杂性 · 计算机科学 2022-02-04 Jessica Enright , Martin Pergel

We develop a new method for visualizing and refining the invariances of learned representations. Specifically, we test for a general form of invariance, linearization, in which the action of a transformation is confined to a low-dimensional…

计算机视觉与模式识别 · 计算机科学 2020-07-28 Olivier J. Hénaff , Eero P. Simoncelli

In this paper, we characterize the structure and topological indices of a class of random spider trees (RSTs) such as degree-based Gini index, degree-based Hoover index, generalized Zagreb index and other indices associated with these. We…

概率论 · 数学 2022-04-25 Saylé C. Sigarreta , Saylí M. Sigarreta , Hugo Cruz-Suárez

In this work we will study the universal labeling algebra A(Gamma), a related algebra B(Gamma), and their behavior as invariants of layered graphs. We will introduce the notion of an upper vertex-like basis, which allows us to recover…

环与代数 · 数学 2013-12-17 Susan Durst

A $k$-ranking of a graph $G$ is a labeling of its vertices from $\{1,\ldots,k\}$ such that any nontrivial path whose endpoints have the same label contains a larger label. The least $k$ for which $G$ has a $k$-ranking is the ranking number…

组合数学 · 数学 2014-01-16 Daniel C. McDonald

We introduce bijections between families of rooted maps with unfixed genus and families of so-called blossoming trees endowed with an arbitrary forward matching of their leaves. We first focus on Eulerian maps with controlled vertex…

组合数学 · 数学 2022-11-28 Éric Fusy , Emmanuel Guitter

A vertex cover of a graph $G = (V, E)$ is a set $X \subseteq V$ such that each edge of $G$ is incident to at least one vertex of $X$. A dominating set $D \subseteq V$ is a total dominating set of $G$ if the subgraph induced by $D$ has no…

组合数学 · 数学 2017-05-02 César Hernández-Cruz , Magdalena Lemańska , Rita Zuazua

Sandpile groups are a subtle graph isomorphism invariant, in the form of a finite abelian group, whose cardinality is the number of spanning trees in the graph. We study their group structure for graphs obtained by attaching a cone vertex…

组合数学 · 数学 2024-09-04 Victor Reiner , Dorian Smith

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

代数拓扑 · 数学 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

We study the dimer model for a planar bipartite graph N embedded in a disk, with boundary vertices on the boundary of the disk. Counting dimer configurations with specified boundary conditions gives a point in the totally nonnegative…

组合数学 · 数学 2017-05-17 Thomas Lam

With a view towards providing tools for analyzing and understanding digitized images, various notions from algebraic topology have been introduced into the setting of digital topology. In the ordinary topological setting, invariants such as…

代数拓扑 · 数学 2019-06-10 Gregory Lupton , John Oprea , Nicholas A. Scoville

This paper deals with computing topological invariants such as connected components, boundary surface genus, and homology groups. For each input data set, we have designed or implemented algorithms to calculate connected components,…

计算机视觉与模式识别 · 计算机科学 2009-12-31 Li Chen

Given the toric (or toral) arrangement defined by a root system $\Phi$, we describe the poset of its layers (connected components of intersections) and we count its elements. Indeed we show how to reduce to zero-dimensional layers, and in…

表示论 · 数学 2009-12-31 Luca Moci

We describe a canonical spanning tree of the ridge graph of a subword complex on a finite Coxeter group. It is based on properties of greedy facets in subword complexes, defined and studied in this paper. Searching this tree yields an…

组合数学 · 数学 2012-10-08 Vincent Pilaud

We extend the notion of algebraic stack to an arbitrary subcanonical site C. If the topology on C is local on the target and satisfies descent for morphisms, we show that algebraic stacks are precisely those which are weakly equivalent to…

代数拓扑 · 数学 2007-08-21 Sharon Hollander

TopoDetect is a Python package that allows the user to investigate if important topological features, such as the Degree of the nodes, their Triangle Count, or their Local Clustering Score, are preserved in the embeddings of graph…

机器学习 · 计算机科学 2021-10-11 Maroun Haddad , Mohamed Bouguessa

We present a complete description of a class of linearizable planar geodesic webs which contain a parallelizable 3-subweb.

微分几何 · 数学 2008-12-16 Vladislav V. Goldberg , Valentin V. Lychagin