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We study an autocatalytic system consisting of several interacting chemical species. We observe a strong dependence of the concentrations of the chemicals on the size of the system. This dependence is caused by the discrete nature of the…

生物物理 · 物理学 2007-05-23 Yuichi Togashi , Kunihiko Kaneko

Autocatalytic reaction system with a small number of molecules is studied numerically by stochastic particle simulations. A novel state due to fluctuation and discreteness in molecular numbers is found, characterized as extinction of…

生物物理 · 物理学 2007-05-23 Yuichi Togashi , Kunihiko Kaneko

Drastic change in dynamics and statistics in a chemical reaction system, induced by smallness in the molecule number, is reported. Through stochastic simulations for random catalytic reaction networks, transition to a novel state is…

适应与自组织系统 · 物理学 2009-11-13 Akinori Awazu , Kunihiko Kaneko

To study the fluctuations and dynamics in chemical reaction processes, stochastic differential equations based on the rate equation involving chemical concentrations are often adopted. When the number of molecules is very small, however,…

化学物理 · 物理学 2007-05-23 Yuichi Togashi , Kunihiko Kaneko

Noise plays a fundamental role in a wide variety of physical and biological dynamical systems. It can arise from an external forcing or due to random dynamics internal to the system. It is well established that even weak noise can result in…

偏微分方程分析 · 数学 2019-08-06 Eric Forgoston , Richard O. Moore

Transitions in the qualitative behavior of chemical reaction dynamics with a decrease in molecule number have attracted much attention. Here, a method based on a Markov process with a tridiagonal transition matrix is applied to the analysis…

分子网络 · 定量生物学 2015-02-25 Nen Saito , Kunihiko Kaneko

In the presence of sufficiently strong disorder or quasiperiodic fields, an interacting many-body system can fail to thermalize and become many-body localized. The associated transition is of particular interest, since it occurs not only in…

We consider a class of models describing an ensemble of identical interacting agents subject to multiplicative noise. In the thermodynamic limit, these systems exhibit continuous and discontinuous phase transitions in a, generally,…

统计力学 · 物理学 2023-10-27 Niccolò Zagli , Grigorios A. Pavliotis , Valerio Lucarini , Alexander Alecio

The development of multicellular organisms proceeds through a series of morphogenetic and cell-state transitions, transforming homogeneous zygotes into complex adults by a process of self-organization. Many of these transitions are achieved…

组织与器官 · 定量生物学 2020-07-08 Jake Cornwall Scoones , Deb Sankar Banerjee , Shiladitya Banerjee

To study the dynamics of chemical processes, we often adopt rate equations to observe the change in chemical concentrations. However, when the number of the molecules is small, the fluctuations cannot be neglected. We often study the…

化学物理 · 物理学 2007-05-23 Yuichi Togashi , Kunihiko Kaneko

Phase-transitionlike behavior is found to occur in globally coupled systems of finite number of elements, and its theoretical explanation is provided. The system studied is a population of globally pulse-coupled integrate-and-fire cells…

适应与自组织系统 · 物理学 2009-11-07 Jun-nosuke Teramae

We study a simple chemical reaction system and effects of the internal noise. The chemical reaction system causes the same transition phenomenon discussed by Togashi and Kaneko [Phys. Rev. Lett. 86 (2001) 2459; J. Phys. Soc. Jpn. 72 (2003)…

统计力学 · 物理学 2009-11-13 Jun Ohkubo , Nadav Shnerb , David A. Kessler

Universal intermittent dynamics in a random catalytic reaction network, induced by smallness in the molecule number is reported. Stochastic simulations for a random catalytic reaction network subject to a flow of chemicals show that the…

统计力学 · 物理学 2009-02-20 Akinori Awazu , Kunihiko Kaneko

It is well known that the addition of noise to a multistable dynamical system can induce random transitions from one stable state to another. For low noise, the times between transitions have an exponential tail and Kramers' formula gives…

动力系统 · 数学 2017-11-15 Peter Ashwin , Jennifer Creaser , Krasimira Tsaneva-Atanasova

We consider a class of nonequilibrium systems of interacting agents with pairwise interactions and quenched disorder in the dynamics featuring, in the thermodynamic limit, phase transitions. We provide conditions on the microscopic…

统计力学 · 物理学 2025-01-24 Niccolò Zagli , Valerio Lucarini , Grigorios Pavliotis

An experimental arrangement and a set of experiments are developed to generate empirical evidence of the effect of noise on a rotating, macro-scale cantilever structure. The experiment is a controlled representation of a rotating machinery…

应用物理 · 物理学 2023-06-01 Lautaro Cilenti , Maria Cameron , Balakumar Balachandran

In equilibrium systems with short-ranged interactions, the relative stability of different thermodynamic states generally does not depend on system size (as long as this size is larger than the interaction range). Here, we use a large…

统计力学 · 物理学 2013-05-30 Sorin Tanase-Nicola , David K. Lubensky

In the past the study of reaction-diffusion systems has greatly contributed to our understanding of the behavior of many-body systems far from equilibrium. In this paper we aim at characterizing the properties of diffusion limited reactions…

统计力学 · 物理学 2015-05-14 Sven Dorosz , Michel Pleimling

Systems composed of large numbers of interacting agents often admit an effective coarse-grained description in terms of a multidimensional stochastic dynamical system, driven by small-amplitude intrinsic noise. In applications to…

概率论 · 数学 2017-03-30 Todd L. Parsons , Tim Rogers

Progress in the creation of large scale, artificial quantum coherent structures demands the investigation of their nonequilibrium dynamics when strong interactions, even between remote parts, are non-perturbative. Analysis of multiparticle…

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