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The understanding of epidemics on networks has greatly benefited from the recent application of message-passing approaches, which allow to derive exact results for irreversible spreading (i.e. diseases with permanent acquired immunity) in…

统计力学 · 物理学 2018-12-05 Claudio Castellano , Romualdo Pastor-Satorras

A stochastic epidemic model is defined in which each individual belongs to a household, a secondary grouping (typically school or workplace) and also the community as a whole. Moreover, infectious contacts take place in these three settings…

应用统计 · 统计学 2009-08-17 Tom Britton , Theodore Kypraios , Philip O'Neill

We investigate the source detection problem in epidemiology, which is one of the most important issues for control of epidemics. Mathematically, we reformulate the problem as one of identifying the relevant component in a multivariate…

统计方法学 · 统计学 2021-06-09 Jun Li , Juliane Manitz , Enrico Bertuzzo , Eric D. Kolaczyk

Sensitivity forecasts inform the design of experiments and the direction of theoretical efforts. To arrive at representative results, Bayesian forecasts should marginalize their conclusions over uncertain parameters and noise realizations…

天体物理仪器与方法 · 物理学 2024-05-24 T. Gessey-Jones , W. J. Handley

The interaction among spreading processes on a complex network is a nontrivial phenomenon of great importance. It has recently been realized that cooperative effects among infective diseases can give rise to qualitative changes in the…

物理与社会 · 物理学 2020-02-25 Byungjoon Min , Claudio Castellano

Recent work has attempted to use whole-genome sequence data from pathogens to reconstruct the transmission trees linking infectors and infectees in outbreaks. However, transmission trees from one outbreak do not generalize to future…

定量方法 · 定量生物学 2023-10-24 Eben Kenah , Tom Britton , M. Elizabeth Halloran , Ira M. Longini

We consider a model for an infectious disease in the onset of an outbreak. We introduce contact tracing incorporating a tracing delay. The effect of randomness in the delay and the effect of the length of this delay in comparison to the…

动力系统 · 数学 2016-11-01 Johannes Müller , Bendix Koopmann

According to different typologies of activity and priority, risks can assume diverse meanings and it can be assessed in different ways. In general risk is measured in terms of a probability combination of an event (frequency) and its…

物理与社会 · 物理学 2009-11-13 C. E. Bonafede , P. Giudici

Early outbreak detection is a key aspect in the containment of infectious diseases, as it enables the identification and isolation of infected individuals before the disease can spread to a larger population. Instead of detecting unexpected…

机器学习 · 计算机科学 2021-10-19 Michael Rapp , Moritz Kulessa , Eneldo Loza Mencía , Johannes Fürnkranz

The outbreak of viruses have necessitated contact tracing and infection tracking methods. Despite various efforts, there is currently no standard scheme for the tracing and tracking. Many nations of the world have therefore, developed their…

The spread of a contagious disease clearly depends on when infected individuals come into contact with susceptible ones. Such effects, however, have remained largely unexplored in the study of epidemic outbreaks. In particular, it remains…

We investigate how the properties of epidemic networks change depending on the availability of different types of data on a disease outbreak. This is achieved by introducing mathematical and computational methods that estimate the…

计算物理 · 物理学 2025-09-03 Oscar Fajardo-Fontiveros , Carl J. E. Suster , Eduardo G. Altmann

Drug resistance and strong contacts actually play crucial roles in epidemic spread in complex systems. Nevertheless, neither theoretical model or methodology is proposed to address this. We thus consider an edge-based epidemic spread model…

物理与社会 · 物理学 2017-09-13 Peng-Bi Cui , Lei Gao , Wei Wang

Causal discovery is crucial for understanding complex systems and informing decisions. While observational data can uncover causal relationships under certain assumptions, it often falls short, making active interventions necessary. Current…

机器学习 · 计算机科学 2024-06-18 Yuxuan Wang , Mingzhou Liu , Xinwei Sun , Wei Wang , Yizhou Wang

Two crucial elements facilitate the understanding and control of communicable disease spread within a social setting. These components are, the underlying contact structure among individuals that determines the pattern of disease…

种群与进化 · 定量生物学 2013-05-29 Pierre-Andre Noel , Bahman Davoudi , Louis J. Dube , Robert C. Brunham , Babak Pourbohloul

We consider a stochastic epidemic model with sideward contact tracing. We assume that infection is driven by interactions within mixing events (gatherings of two or more individuals). Once an infective is diagnosed, each individual who was…

种群与进化 · 定量生物学 2025-03-28 Dongni Zhang , Martina Favero

Reconstructing pathogen dynamics from genetic data as they become available during an outbreak or epidemic represents an important statistical scenario in which observations arrive sequentially in time and one is interested in performing…

种群与进化 · 定量生物学 2020-02-04 Mandev S. Gill , Philippe Lemey , Marc A. Suchard , Andrew Rambaut , Guy Baele

Background: Following the outbreak of the coronavirus epidemic in early 2020, municipalities, regional governments and policymakers worldwide had to plan their Non-Pharmaceutical Interventions (NPIs) amidst a scenario of great uncertainty.…

We approach the development of models and control strategies of susceptible-infected-susceptible (SIS) epidemic processes from the perspective of marked temporal point processes and stochastic optimal control of stochastic differential…

最优化与控制 · 数学 2018-12-04 Lars Lorch , Abir De , Samir Bhatt , William Trouleau , Utkarsh Upadhyay , Manuel Gomez-Rodriguez

We study contact epidemic models for the spread of infective diseases in finite populations. The size dependence enters in the infection rate. The dynamics of such models is then analyzed within the deterministic approximation, as well as…

种群与进化 · 定量生物学 2020-04-07 Ph. Blanchard , S. Nicolis