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相关论文: The Coalescence of Intrahost HIV Lineages Under Sy…

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Human immunodeficiency virus (HIV-1 or simply HIV) induces a persistent infection, which in the absence of treatment leads to AIDS and death in almost all infected individuals. HIV infection elicits a vigorous immune response starting about…

种群与进化 · 定量生物学 2015-06-05 Vitaly V. Ganusov , Richard A. Neher , Alan S. Perelson

The rates of escape and reversion in response to selection pressure arising from the host immune system, notably the cytotoxic T-lymphocyte (CTL) response, are key factors determining the evolution of HIV. Existing methods for estimating…

种群与进化 · 定量生物学 2013-02-12 Duncan Palmer , John Frater , Rodney Philips , Angela McLean , Gil McVean

Cytotoxic T-lymphocytes (CTLs) recognize viral protein fragments displayed by major histocompatibility complex (MHC) molecules on the surface of virally infected cells and generate an anti-viral response that can kill the infected cells.…

种群与进化 · 定量生物学 2014-03-25 Taylor A. Kessinger , Alan S. Perelson , Richard A. Neher

A delayed model describing the dynamics of HIV (Human Immunodeficiency Virus) with CTL (Cytotoxic T Lymphocytes) immune response is investigated. The model includes four nonlinear differential equations describing the evolution of…

最优化与控制 · 数学 2018-06-13 Karam Allali , Sanaa Harroudi , Delfim F. M. Torres

In this work we develop a stochastic model of acute HIV infection, based on the well-known standard model, that allows us to simulate the complex mutation pathways of HIV escape from multiple CTL responses. Under this model, we describe two…

种群与进化 · 定量生物学 2012-08-16 Sivan Leviyang

A dynamic model of non-lineal time-dependent ordinary differential equations (ODE) has been applied to the interactions of a HIV infection with the immune system cells. This model has been simplified into two compartments: lymph node and…

细胞行为 · 定量生物学 2020-08-07 Miguel Ramos Pascual

In [Math. Comput. Sci. 12 (2018), no. 2, 111--127], a delayed model describing the dynamics of the Human Immunodeficiency Virus (HIV) with Cytotoxic T Lymphocytes (CTL) immune response is investigated by Allali, Harroudi and Torres. Here,…

动力系统 · 数学 2022-10-03 Sandra Vaz , Delfim F. M. Torres

During an infection, HIV experiences strong selection by immune system T cells. Recent experimental work has shown that MHC escape mutations form an important pathway for HIV to avoid such selection. In this paper, we study a model of MHC…

概率论 · 数学 2009-09-02 Sivan Leviyang

One way in which the human immunodeficiency virus (HIV-1) replicates within a host is by infecting activated CD4+ T-cells, which then produce additional copies of the virus. Even with the introduction of antiretroviral drug therapy, which…

动力系统 · 数学 2016-04-18 Stephen Pankavich

Intrahost simian immunodeficiency virus (SIV) evolution is marked by repeated viral escape from cytotoxic T-lymphocyte (CTLs) response. Typically, the first such CTL escape occurs in a matter of days, starting around the time of peak viral…

种群与进化 · 定量生物学 2013-08-01 Sivan Leviyang

Multiple mechanisms in the HIV lifecycle play a role in its ability to evade therapy and become a chronic, difficult-to-treat infection. Within its major cellular target, the activated T cell, many steps occur between viral entry and viral…

细胞行为 · 定量生物学 2017-12-04 Jayodita C. Sanghvi , Don Mai , Adam P. Arkin , David V. Schaffer

Mathematical modeling and analysis can provide insight on the dynamics of ecosystems which maintain biodiversity in the face of competitive and prey-predator interactions. Of primary interests are the underlying structure and features which…

种群与进化 · 定量生物学 2017-01-03 Cameron J. Browne

We propose and study a new mathematical model of the human immunodeficiency virus (HIV). The main novelty is to consider that the antibody growth depends not only on the virus and on the antibodies concentration but also on the uninfected…

最优化与控制 · 数学 2022-01-26 Karam Allali , Sanaa Harroudi , Delfim F. M. Torres

Introduction. Can the infection due to the human immunodeficiency virus type 1 induce a change in the differentiation status or process in T cells?. Methods. We will consider two stochastic Markov chain models, one which will describe the…

分子网络 · 定量生物学 2021-02-09 Alfonso Vivanco-Lira , José-Raúl Nieto-Saucedo

Tuberculosis (TB) and human immunodeficiency virus (HIV) can be considered a deadly human syndemic. In this article, we formulate a model for TB and HIV transmission dynamics. The model considers both TB and acquired immune deficiency…

动力系统 · 数学 2014-07-15 Cristiana J. Silva , Delfim F. M. Torres

Oxidative stress, a reaction caused by the imbalance between the reactive oxygen species of human organism and its ability to detoxify reactive intermediates and to repair the resulting damage plays an important role in HIV-infections. On…

种群与进化 · 定量生物学 2018-08-08 Shaoli Wang , Fei Xu , Xinyu Song

Intra-tumour heterogeneity (ITH) has a strong impact on the efficacy of the immune response against solid tumours. The number of sub-populations of cancer cells expressing different antigens and the percentage of immunogenic cells (i.e.…

细胞行为 · 定量生物学 2021-12-08 Emma Leschiera , Tommaso Lorenzi , Shensi Shen , Luis Almeida , Chloe Audebert

In this paper, we investigate a novel 3-compartment model of HIV infection of CD4$^+$ T-cells with a mass action term by including two versions: one baseline ODE model and one delay-differential equation (DDE) model with a constant discrete…

种群与进化 · 定量生物学 2021-01-05 Hoang Anh Ngo , Hung Dang Nguyen , Mehmet Dik

One of the cornerstones in combating the HIV pandemic is being able to assess the current state and evolution of local HIV epidemics. This remains a complex problem, as many HIV infected individuals remain unaware of their infection status,…

种群与进化 · 定量生物学 2019-10-24 Pieter Libin , Nassim Versbraegen , Ana B. Abecasis , Perpetua Gomes , Tom Lenaerts , Ann Nowé

Recent clinical studies have shown that HIV disease pathogenesis can depend strongly on many factors at the time of transmission, including the strength of the initial viral load and the local availability of CD4+ T-cells. In this article,…

种群与进化 · 定量生物学 2019-10-15 Stephen Pankavich , Nathan Neri , Deborah Shutt
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