相关论文: A combinatorial framework for RNA tertiary interac…
There are various results connecting ranks of incidence matrices of graphs and hypergraphs with their combinatorial structure. Here, we consider the generalized incidence matrix $N_2$ (defined by inclusion of pairs in edges) for one natural…
Accurate prediction of RNA secondary structure underpins transcriptome annotation, mechanistic analysis of non-coding RNAs, and RNA therapeutic design. Recent gains from deep learning and RNA foundation models are difficult to interpret…
Entanglement is a fundamental resource for many applications in quantum information processing. Here, we investigate how quantum transport in simple quantum graphs, modeled as controlled two-level quantum systems, can be utilized to…
We use stable maps, and their stable lifts to the Semple bundle variety of second-order curvilinear data, to calculate certain characteristic numbers for rational plane curves. These characteristic numbers involve first-order (tangency) and…
We view the folding of RNA-sequences as a map that assigns a pattern of base pairings to each sequence, known as secondary structure. These preimages can be constructed as random graphs (i.e. the neutral networks associated to the structure…
We characterize non-perturbatively the R\'enyi entropies of degree n=2,3,4, and 5 of three-dimensional, strongly coupled many-fermion systems in the scale-invariant regime of short interaction range and large scattering length, i.e. in the…
We give a formula for the duality structure of the 3-manifold obtained by doing zero-framed surgery along a knot in the 3-sphere, starting from a diagram of the knot. We then use this to give a combinatorial algorithm for computing the…
The ongoing effort to detect and characterize physical entanglement in biopolymers has so far established that knots are present in many globular proteins and also abound in viral DNA packaged inside bacteriophages. RNA molecules, on the…
We extend the entanglement bootstrap approach to (3+1)-dimensions. We study knotted excitations of (3+1)-dimensional liquid topological orders and exotic fusion processes of loops. As in previous work in (2+1)-dimensions, we define a…
It is known that three-body contact interactions in one-dimensional $n(\geq3)$-body problems of nonidentical particles can be topologically nontrivial: they are all classified by unitary irreducible representations of the pure twin group…
The prediction of single particle level crossing phenomenon between $2p_{3/2}$ and $1f_{5/2}$ orbitals in $Ni$- and $Cu$-isotopic chains by the finite range simple effective interaction without requiring the tensor part is discussed. In…
Tolerance graphs model interval relations in such a way that intervals can tolerate a certain degree of overlap without being in conflict. This subclass of perfect graphs has been extensively studied, due to both its interesting structure…
Scheinerman and Wilf (1994) assert that `an important open problem in the study of graph embeddings is to determine the rectilinear crossing number of the complete graph K_n.' A rectilinear drawing of K_n is an arrangement of n vertices in…
We explore the phase diagram of Ising spins on one-dimensional chains which criss-cross in two perpendicular directions and which are connected by interchain couplings. This system is of interest as a simpler, classical analog of a quantum…
We show that odd order R\'enyi entropies $S^{(2q+1)}$ of a system of interacting scalar fields can be calculated as the free energy of $2q+1$ replicas of the system with additional quadratic inter-replica couplings in the subsystem at the…
In reality, many real-world networks interact with and depend on other networks. We develop an analytical framework for studying interacting networks and present an exact percolation law for a network of $n$ interdependent networks (NON).…
Given a surface with boundary and some points on its boundary, a polygon diagram is a way to connect those points as vertices of non-overlapping polygons on the surface. Such polygon diagrams represent non-crossing permutations on a surface…
We venture a proof of crossing symmetry for non-planar diagrams in perturbative QFT. For the planar diagrams a proof of crossing is available in the literature and our method closely follows the one depicted in that case. We classify the…
We present a general method for incorporating the electromagnetic interaction into descriptions of hadronic processes based on four-dimensional scattering integral equations. The method involves the idea of gauging the scattering equations…
Triadic interactions are the fundamental mechanism of energy transfer in fluid flows. This work introduces bispectral mode decomposition as a direct means of educing flow structures that are associated with triadic interactions from…