相关论文: Two-state dynamics for replicating two-strand syst…

We here examine the nonlinear dynamics of artificial homogeneous DNA chain relying on the plain-base rotator model. It is shown that such dynamics can exhibit kink and antikink solitons of sine-Gordon type. In that respect we propose…

A novel, protean, topological soliton has recently been shown to emerge in systems of repulsive particles in cylindrical geometries, whose statics is described by the number-theoretical objects of phyllotaxis. Here we present a minimal and…

General higher order rogue waves of a vector nonlinear Schrodinger equation (Manakov system) are derived using a Darboux-dressing transformation with an asymptotic expansion method. The Nth order semi-rational solutions containing 3N free…

The two strands of a DNA molecule with a repetitive sequence can pair into many different basepairing patterns. For perfectly periodic sequences, early bulk experiments of Poerschke indicate the existence of a sliding process, permitting…

Charge transfer in a DNA duplex chain is studied by constructing a system with virtual electrodes connected at the ends of each DNA strand. The systeym is described by the tight-binding model and its transport is analyzed by the transfer…

In this paper the permanent profile waves governed by a Boussinesq-type wave equation are analysed. The model involves displacement-type nonlinearities and dispersion terms. Physically such a model equation describes longitudinal waves…

Modelling the process of recombination leads to a large coupled nonlinear dynamical system. Here, we consider a particular case of recombination in {\em discrete} time, allowing only for {\em single crossovers}. While the analogous dynamics…

While stretching of most polymer chains leads to rather featureless force-extension diagrams, some, notably DNA, exhibit non-trivial behavior with a distinct plateau region. Here we propose a unified theory that connects force-extension…

We develop method that allows to derive reductions and solutions to hyperbolic systems of partial differential equations. The method is based on using functions that are constant in the direction of characteristics of the system. These…

Binary symmetry constraints are applied to constructing B\"acklund transformations of soliton systems, both continuous and discrete. Construction of solutions to soliton systems is split into finding solutions to lower-dimensional Liouville…

The $2$-dimensional Toda lattice ($2$D Toda) is a completely integrable semi-discrete wave equation with the KP-II equation in its continuous limit. Using Darboux transformations, we prove the linear stability of $1$-line solitons for $2$D…

The Darboux-Dressing Transformations are applied to the Lax pair associated to systems of coupled nonlinear wave equations in the case of boundary values which are appropriate to both bright and dark soliton solutions. The general formalism…

Darboux transformation is constructed for superfields of the super sine-Gordon equation and the superfields of the associated linear problem. The Darboux transformation is shown to be related to the super B\"{a}cklund transformation and is…

Complementary strands in DNA double helix show temporary fluctuational openings which are essential to biological functions such as transcription and replication of the genetic information. Such large amplitude fluctuations, known as the…

The two component model describes neutron star dynamics incorporating the response of the superfluid interior. Conventional solutions and applications involve constant external torques, as appropriate for radio pulsars on dynamical…

The Darboux--Dressing Transformations are applied to the Lax pair associated to the system of nonlinear equations describing the resonant interaction of three waves in 1+1 dimensions. We display explicit solutions featuring localized waves…

Existence and spatio-temporal symmetric patterns of periodic solutions to second order reversible equivariant non-autonomous periodic systems with multiple delays are studied under the Hartman-Nagumo growth conditions. The method is based…

Families of solutions to the field equations of the covariant BRST invariant effective action of the membrane theory are constructed. The equations are discussed in a double dimensional reduction, they lead to a nonlinear equation for a one…

We introduce a two-state non-conserving driven-diffusive system in one-dimension under a discrete-time updating scheme. We show that the steady-state of the system can be obtained using a matrix product approach. On the other hand, the…

DNA migration in topologically structured microchannels with periodic cavities is investigated experimentally and with Brownian dynamics simulations of a simple bead-spring model. The results are in very good agreement with one another. In…