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A principle of evolutionary adaptation is applied to the Lotka--Volterra models, in particular to the food webs. We present a relatively simple computational algorithm of optimization with respect to a given criterion. This algorithm boils…

种群与进化 · 定量生物学 2021-09-06 Alexander S. Bratus , Anastasiia V. Korushkina , Artem S. Novozhilov

We introduce and study a general model of social network formation and evolution based on the concept of preferential link formation between similar nodes and increased similarity between connected nodes. The model is studied numerically…

物理与社会 · 物理学 2007-05-23 George C. M. A. Ehrhardt , Matteo Marsili , Fernando Vega-Redondo

We develop a stochastic, individual-based model for food web simulation which in the large-population limit reduces to the well-studied Webworld model, which has been used to successfully construct model food webs with several realistic…

种群与进化 · 定量生物学 2008-08-29 Craig R. Powell , Richard P. Boland

We present results contrasting food webs constructed using the same model where the source of species was either evolution or immigration from a previously evolved species pool. The overall structure of the webs are remarkably similar,…

种群与进化 · 定量生物学 2008-08-22 Craig R. Powell , Alan J. McKane

The co-authorship network of scientists represents a prototype of complex evolving networks. By mapping the electronic database containing all relevant journals in mathematics and neuro-science for an eight-year period (1991-98), we infer…

软凝聚态物质 · 物理学 2009-11-07 A. L. Barabasi , H. Jeong , Z. Neda , E. Ravasz , A. Schubert , T. Vicsek

Systems composed of distinct complex networks are present in many real-world environments, from society to ecological systems. In the present paper, we propose a network model obtained as a consequence of interactions between two species…

生物物理 · 物理学 2007-08-08 Luis Enrique Correa da Rocha , Luciano da Fontoura Costa

This is the second of two papers dedicated to the relationship between population models of competition and biodiversity. Here we consider species assembly models where the population dynamics is kept far from fixed points through the…

种群与进化 · 定量生物学 2007-05-23 Ugo Bastolla , Michael Lässig , Susanna C. Manrubia , Angelo Valleriani

A classic measure of ecological stability describes the tendency of a community to return to equilibrium after small perturbation. While many advances show how the network structure of these communities severely constrains such tendencies,…

种群与进化 · 定量生物学 2015-06-09 Gang Yan , Neo D. Martinez , Yang-Yu Liu

Protein structures can be studied as complex networks of interacting amino acids. We study proteins of different structural classes from the network perspective. Our results indicate that proteins, regardless of their structural class, show…

分子网络 · 定量生物学 2007-11-19 Ganesh Bagler , Somdatta Sinha

Species interaction networks are a powerful tool for describing ecological communities; they typically contain nodes representing species, and edges representing interactions between those species. For the purposes of drawing abstract…

机器学习 · 计算机科学 2025-02-25 Sanaz Hasanzadeh Fard , Emily Dolson

The importance of modeling and analyzing Social Networks is a consequence of the success of Online Social Networks during last years. Several models of networks have been proposed, reflecting the different characteristics of Social…

社会与信息网络 · 计算机科学 2012-02-03 Emilio Ferrara , Giacomo Fiumara

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

统计力学 · 物理学 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

Food webs, networks of feeding relationships among organisms, provide fundamental insights into mechanisms that determine ecosystem stability and persistence. Despite long-standing interest in the compartmental structure of food webs, past…

种群与进化 · 定量生物学 2013-06-18 Edward B. Baskerville , Andy P. Dobson , Trevor Bedford , Stefano Allesina , Mercedes Pascual

The structure of ecological interactions is commonly understood through analyses of interaction networks. However, these analyses may be sensitive to sampling biases in both the interactors (the nodes of the network) and interactions (the…

We review the recent fast progress in statistical physics of evolving networks. Interest has focused mainly on the structural properties of random complex networks in communications, biology, social sciences and economics. A number of giant…

统计力学 · 物理学 2015-06-24 S. N. Dorogovtsev , J. F. F. Mendes

A major issue in biology is the understanding of the interactions between proteins. These interactions can be described by a network, where the proteins are modeled by nodes and the interactions by edges. The origin of these protein…

生物物理 · 物理学 2011-08-01 Christian M. Schneider , Lucilla de Arcangelis , Hans J. Herrmann

A detailed analysis of three species-rich ecosystem food webs has shown that they display scale-free distributions of connections. Such graphs of interaction are in fact shared by a number of biological and technological networks, which…

无序系统与神经网络 · 物理学 2007-05-23 Ricard V. Sole Jose M. Montoya

Networked structures arise in a wide array of different contexts such as technological and transportation infrastructures, social phenomena, and biological systems. These highly interconnected systems have recently been the focus of a great…

统计力学 · 物理学 2009-11-10 Alain Barrat , Marc Barthelemy , Romualdo Pastor-Satorras , Alessandro Vespignani

Many social, technological and biological interactions involve network relationships whose outcome intimately depends on the structure of the network and on the strengths of the connections. Yet, although much information is now available…

统计力学 · 物理学 2009-11-10 Guido Caldarelli , Fabrizio Coccetti , Paolo De Los Rios

The advent of Internet and World Wide Web has led to unprecedent growth of the information available. People usually face the information overload by following a limited number of sources which best fit their interests. It has thus become…

物理与社会 · 物理学 2015-05-28 Giulio Cimini , Duanbing Chen , Matus Medo , Linyuan Lu , Yi-Cheng Zhang , Tao Zhou