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In recent years, graph-based machine learning techniques, such as reinforcement learning and graph neural networks, have garnered significant attention. While some recent studies have started to explore the relationship between the graph…

机器学习 · 计算机科学 2025-07-15 Yash Arya , Sang Hoon Lee

Social network structures play an important role in the lives of animals by affecting individual fitness and the spread of disease and information. Nevertheless, we still lack a good understanding of how these structures emerge from the…

物理与社会 · 物理学 2026-02-16 Josefine Bohr Brask , Andreas Koher , Darren P. Croft , Sune Lehmann

Social animals self-organise to create groups to increase protection against predators and productivity. One-to-one interactions are the building blocks of these emergent social structures and may correspond to friendship, grooming,…

物理与社会 · 物理学 2021-06-02 Luis E C Rocha , Jan Ryckebusch , Koen Schoors , Matthew Smith

Food webs with intraguild predation (IGP) are widespread in natural habitats. Their adaptation and resilience behaviour is principal for understanding restructuring of ecological communities. In spite of the importance of IGP food webs…

种群与进化 · 定量生物学 2012-04-16 E. Shchekinova , M. G. J. Löder , M. Boersma , K. H. Wiltshire

Many societies are organized in networks that are formed by people who meet and interact over time. In this paper, we present a first model to capture the micro-foundations of social networks evolution, where boundedly rational agents of…

社会与信息网络 · 计算机科学 2015-08-17 Ahmed M. Alaa , Kartik Ahuja , Mihaela van der Schaar

The internet structure is extremely complex. The Positive-Feedback Preference (PFP) model is a recently introduced internet topology generator. The model uses two generic algorithms to replicate the evolution dynamics observed on the…

网络与互联网体系结构 · 计算机科学 2007-05-23 Shi Zhou

Networks offer a powerful approach to modeling complex systems by representing the underlying set of pairwise interactions. Link prediction is the task that predicts links of a network that are not directly visible, with profound…

物理与社会 · 物理学 2024-04-22 Yijun Ran , Xiao-Ke Xu , Tao Jia

Food webs are complex ecological networks whose structure is both ecologically and statistically constrained, with many network properties being correlated with each other. Despite the recognition of these invariable relationships in food…

定量方法 · 定量生物学 2023-01-18 Francis Banville , Dominique Gravel , Timothée Poisot

We introduce a graph generating model aimed at representing the evolution of protein interaction networks. The model is based on the hypotesis of evolution by duplications and divergence of the genes which produce proteins. The obtained…

统计力学 · 物理学 2007-05-23 A. Vazquez , A. Flammini , A. Maritan , A. Vespignani

The study of human interactions is of central importance for understanding the behavior of individuals, groups and societies. Here, we observe the formation and evolution of networks by monitoring the addition of all new links and we…

物理与社会 · 物理学 2013-02-01 Lazaros K. Gallos , Diego Rybski , Fredrik Liljeros , Shlomo Havlin , Hernan A. Makse

It has been discovered recently that many social, biological and ecological systems have the so-called small-world and scale-free features, which has provoked new research interest in the studies of various complex networks. Yet, most…

无序系统与神经网络 · 物理学 2007-05-23 Chunguang Li , Guanrong Chen

Community detection emerges as an important task in the discovery of network mesoscopic structures. However, the concept of a "good" community is very context-dependent and it is relatively complicated to deduce community characteristics…

社会与信息网络 · 计算机科学 2018-06-06 Vinh-Loc Dao , Cécile Bothorel , Philippe Lenca

We performed a stability analysis of 119 quantitative food webs which were compiled using a standard methodology to build Ecopath mass-balance models. Our analysis reveals that classic descriptors of complexity do not affect stability in…

We propose a generic model of eco-systems, with a {\it hierarchical} food web structure. In our computer simulations we let the eco-system evolve continuously for so long that that we can monitor extinctions as well as speciations over…

种群与进化 · 定量生物学 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Genetic regulatory networks are defined by their topology and by a multitude of continuously adjustable parameters. Here we present a class of simple models within which the relative importance of topology vs. interaction strengths becomes…

分子网络 · 定量生物学 2013-08-02 Mikhail Tikhonov , William Bialek

The topological structures of the Internet and the Web have received considerable attention. However, there has been little research on the topological properties of individual web sites. In this paper, we consider whether web sites (as…

信息检索 · 计算机科学 2016-11-17 Shi Zhou , Ingemar Cox , Vaclav Petricek

We develop a novel approach to study the global behaviour of large foodwebs for ecosystems where several species share multiple resources. The model extends and generalize some previous works and takes into account self-limitation. Under…

动力系统 · 数学 2019-03-12 Vladimir Kozlov , Vladimir G. Tkachev , Sergey Vakulenko , Uno Wennergren

Recent technological advances and long-term data studies provide interaction data that can be modelled through dynamic networks, i.e a sequence of different snapshots of an evolving ecological network. Most often time is the parameter along…

种群与进化 · 定量生物学 2017-01-06 Vincent Miele , Catherine Matias

We introduce an evolutionary metacommunity of multitrophic food webs on several habitats coupled by migration. In contrast to previous studies that focus either on evolutionary or on spatial aspects, we include both and investigate the…

种群与进化 · 定量生物学 2018-04-20 Korinna T. Allhoff , Eva Marie Weiel , Tobias Rogge , Barbara Drossel

Community structures have been identified in various complex real-world networks, for example, communication, information, internet and shareholder networks. The scaling of community size distribution indicates the heterogeneity in the…

物理与社会 · 物理学 2022-07-11 Qing Yao , Bingsheng Chen , Tim S. Evans , Kim Christensen