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There is increasing interest in the analysis of biological tissue, its organization and its dynamics with the help of mathematical models. In the ideal case emergent properties on the tissue scale can be derived from the cellular scale.…

组织与器官 · 定量生物学 2009-11-13 Tilo Beyer , Michael Meyer-Hermann

We study a coarsening process of one-dimensional cell complexes. We show that if cell boundaries move with velocities proportional to the difference in size of neighboring cells, then the average cell size grows at a prescribed exponential…

概率论 · 数学 2015-12-03 Emanuel Lazar , Robin Pemantle

When the motion of a motile cell is observed closely, it appears erratic, and yet the combination of nonequilibrium forces and surfaces can produce striking examples of organization in microbial systems. While most of our current…

We propose a stochastic model for intracellular transport processes associated with the activity of molecular motors. This out-of-equilibrium model, based on a generalized Langevin equation, considers a particle immersed in a viscoelastic…

生物物理 · 物理学 2009-04-15 L. Bruno , M. A. Despósito

Cell tracking enables data extraction from time-lapse "cell movies" and promotes modeling biological processes at the single-cell level. We introduce a new fully automated computational strategy to track accurately cells across frames in…

计算机视觉与模式识别 · 计算机科学 2017-06-23 Athanasios D. Balomenos , Panagiotis Tsakanikas , Elias S. Manolakos

The relationship between cell density and velocity is often assumed to be negative, reflecting crowding-induced suppression of movement. However, observations across systems reveal a more nuanced picture: while some emphasize contact…

软凝聚态物质 · 物理学 2025-08-27 Hengdong Lu , Tianxiang Ma , Amin Doostmohammadi

Cell proliferation is typically incorporated into stochastic mathematical models of cell migration by assuming that cell divisions occur after an exponentially distributed waiting time. Experimental observations, however, show that this…

细胞行为 · 定量生物学 2018-06-11 Enrico Gavagnin , Matthew J. Ford , Richard L. Mort , Tim Rogers , Christian A. Yates

Experiments have found that diffusion in metabolically active cells is much faster than in dormant cells, especially for large particles. However, the mechanism of this size-dependent diffusion enhancement in living cells is still unclear.…

生物物理 · 物理学 2023-04-04 Lingyu Meng , Yiteng Jin , Yichao Guan , Jiayi Xu , Jie Lin

Mathematical models of motility are often based on random-walk descriptions of discrete individuals that can move according to certain rules. It is usually the case that large masses concentrated in small regions of space have a great…

物理与社会 · 物理学 2022-11-23 Carles Falcó

We consider the relation between the microscopic and effective descriptions of the unfolding experiment on a model polypeptide. We evaluate the probability distribution function of the performed work by Monte Carlo simulations and compare…

统计力学 · 物理学 2015-05-13 A. Imparato , L. Peliti

Cell movement, for example during embryogenesis or tumor metastasis, is a complex dynamical process resulting from an intricate interplay of multiple components of the cellular migration machinery. At first sight, the paths of migrating…

细胞行为 · 定量生物学 2009-04-17 Peter Dieterich , Rainer Klages , Roland Preuss , Albrecht Schwab

The cell cycle duration is a variable cellular phenotype that underlies long-term population growth and age structures. By analyzing the stationary solutions of a branching process with heritable cell division times, we demonstrate…

种群与进化 · 定量生物学 2021-01-04 Takashi Nozoe , Edo Kussell

We consider the spread of epidemics in technological and social networks. How do people react? Does awareness and cautious behavior help? We analyze these questions and present a dynamic model to describe the movement of individuals and/or…

社会与信息网络 · 计算机科学 2015-03-19 Robert Elsässer , Adrian Ogierman

Eukaryotic cells can move spontaneously without being guided by external cues. For such spontaneous movements, a variety of different modes have been observed, including the amoeboid-like locomotion with protrusion of multiple pseudopods,…

细胞行为 · 定量生物学 2009-03-16 Shin I. Nishimura , Masahiro Ueda , Masaki Sasai

The motion of a eukaryotic cell presents a variety of interesting and challenging problems from both a modeling and a computational perspective. The processes span many spatial scales (from molecular to tissue) as well as disparate time…

细胞行为 · 定量生物学 2010-11-25 Ben Vanderlei , James J. Feng , Leah Edelstein-Keshet

We seek to characterize the motility of mouse fibroblasts on 2D substrates. Utilizing automated tracking techniques, we find that cell trajectories are super-diffusive, where displacements scale faster than t^(1/2) in all directions. Two…

软凝聚态物质 · 物理学 2017-12-15 G Passucci , ME Brasch , JH Henderson , V Zaburdaev , ML Manning

Cell polarity and movement are fundamental to many biological functions. Experimental and theoretically studies have indicated that interactions of certain proteins lead to the cell polarization which plays a key role in controlling the…

动力系统 · 数学 2022-08-12 Shuang Liu , Li-Tien Cheng , Bo Li

Motile biological cells in tissue often display the phenomenon of durotaxis, i.e. they tend to move towards stiffer parts of substrate tissue. The mechanism for this behavior is not completely understood. We consider simplified models for…

生物物理 · 物理学 2019-01-03 Charles R. Doering , Xiaoming Mao , Leonard M. Sander

Cell migration is essential for regulating many biological processes in physiological or pathological conditions, including embryonic development and cancer invasion. In vitro and in silico studies suggest that collective cell migration is…

Cell sorting, the segregation of cells with different properties into distinct domains, is a key phenomenon in biological processes such as embryogenesis. We use a phase-field model of a confluent cell layer to study the role of activity in…

生物物理 · 物理学 2024-03-05 James N. Graham , Guanming Zhang , Julia M. Yeomans