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The spatiotemporal coordination and regulation of cell proliferation is fundamental in many aspects of development and tissue maintenance. Cells have the ability to adapt their division rates in response to mechanical constraints, yet we do…

定量方法 · 定量生物学 2024-04-25 Carles Falcó , Daniel J. Cohen , José A. Carrillo , Ruth E. Baker

Cellular development follows a stochastic yet rule-governed trajectory, though the underlying principles remain elusive. Here, we propose that cellular development follows paths of least action, aligning with foundational physical laws that…

生物物理 · 物理学 2025-04-14 Rohola Zandie , Farhan Khodaee , Yufan Xia , Elazer R. Edelman

Cell alignment often forms nematic order, which can lead to anomalous collective cell flow due to the so-called active force. Although it is appreciated that cell migration is driven by traction force, a quantitative evaluation of the…

软凝聚态物质 · 物理学 2024-02-27 Masahito Uwamichi , He Li , Zihui Zhao , Yisong Yao , Hideo Higuchi , Kyogo Kawaguchi , Masaki Sano

Cell migration is an indispensable physiological and pathological process for normal tissue development and cancer metastasis, which is greatly regulated by intracellular signal pathways and extracellular microenvironment (ECM). However,…

生物物理 · 物理学 2020-10-27 Yanping Liu , Yang Jiao , Guoqiang Li , Gao Wang , Jingru Yao , Guo Chen , Silong Lou , Jianwei Shuai , Liyu Liu

We revisit a recently proposed agent-based model of active biological motion and compare its predictions with own experimental findings for the speed distribution of bacterial cells, \emph{Salmonella typhimurium}. Agents move according to a…

细胞行为 · 定量生物学 2011-09-19 Victor Garcia , Mirko Birbaumer , Frank Schweitzer

Human mobility has been empirically observed to exhibit Levy flight characteristics and behaviour with power-law distributed jump size. The fundamental mechanisms behind this behaviour has not yet been fully explained. In this paper, we…

物理与社会 · 物理学 2015-02-03 Kai Zhao , Mirco Musolesi , Pan Hui , Weixiong Rao , Sasu Tarkoma

One approach to quantifying biological diversity consists of characterizing the statistical distribution of specific properties of a taxonomic group or habitat. Microorganisms living in fluid environments, and for whom motility is key,…

软凝聚态物质 · 物理学 2020-12-03 Maciej Lisicki , Marcos F. Velho Rodrigues , Raymond E. Goldstein , Eric Lauga

Trajectories of endosomes inside living eukaryotic cells are highly heterogeneous in space and time and diffuse anomalously due to a combination of viscoelasticity, caging, aggregation and active transport. Some of the trajectories display…

亚细胞过程 · 定量生物学 2021-07-28 Nickolay Korabel , Daniel Han , Alessandro Taloni , Gianni Pagnini , Sergei Fedotov , Viki Allan , Thomas A. Waigh

Epithelial cell monolayers show remarkable displacement and velocity correlations over distances of ten or more cell sizes that are reminiscent of supercooled liquids and active nematics. We show that many observed features can be described…

软凝聚态物质 · 物理学 2020-04-22 Silke Henkes , Kaja Kostanjevec , J. Martin Collinson , Rastko Sknepnek , Eric Bertin

In this paper, we focus on statistical region-based active contour models where image features (e.g. intensity) are random variables whose distribution belongs to some parametric family (e.g. exponential) rather than confining ourselves to…

计算机视觉与模式识别 · 计算机科学 2008-05-22 François Lecellier , Stéphanie Jehan-Besson , Jalal Fadili , Gilles Aubert , Marinette Revenu

Collective motion of cells is common in many physiological processes, including tissue development, repair, and tumor formation. Recent experiments have shown that certain malignant cancer cells form clusters in a chemoattractant gradient,…

生物物理 · 物理学 2017-05-02 Katherine Copenhagen , Gema Malet-Engra , Weimiao Yu , Giorgio Scita , Nir Gov , Ajay Gopinathan

We characterize cell motion in experiments and show that the transition to collective motion in colonies of gliding bacterial cells confined to a monolayer appears through the organization of cells into larger moving clusters. Collective…

This paper theoretically analyzes a phenomenological stochastic model for bacterial growth. This model comprises cell division and the linear growth of cells, where growth rates and cell cycles are drawn from lognormal distributions. We…

生物物理 · 物理学 2016-06-28 Ken Yamamoto , Jun-ichi Wakita

A discrete model for computer simulations of the clustering dynamics of Social Amoebae is presented. This model incorporates the wavelike propagation of extracellular signaling cAMP, the sporadic firing of cells at early stage of…

细胞行为 · 定量生物学 2013-05-14 Yipeng Yang , Y. Charles Li

Self-activation coupled to a transport mechanism results in traveling waves that describe polymerization reactions, forest fires, tumor growth, and even the spread of epidemics. Diffusion is a simple and commonly used model of particle…

统计力学 · 物理学 2020-07-06 Keisuke Ishihara , Ashish B. George , Ryan Cornelius , Kirill S. Korolev

The migration behavior of colliding cells is critically determined by transient contact-interactions. During these interactions, the motility machinery, including the front-rear polarization of the cell, dynamically responds to surface…

The spreading of evolutionary novelties across populations is the central element of adaptation. Unless population are well-mixed (like bacteria in a shaken test tube), the spreading dynamics not only depends on fitness differences but also…

种群与进化 · 定量生物学 2015-06-19 Oskar Hallatschek , Daniel S. Fisher

Systems switching between different dynamical phases is an ubiquitous phenomenon. The general understanding of such a process is limited. To this end, we present a general expression that captures fluctuations of a system exhibiting a…

统计力学 · 物理学 2024-12-05 Ion Santra , Kristian Stølevik Olsen , Deepak Gupta

Conventional cell tracking methods detect multiple cells in each frame (detection) and then associate the detection results in successive time-frames (association). Most cell tracking methods perform the association task independently from…

计算机视觉与模式识别 · 计算机科学 2020-02-27 Junya Hayashida , Kazuya Nishimura , Ryoma Bise

In this work, we study in detail the distribution of stochastic forces generated by the molecular motors activity, in the actin cortex of pre-muscular cells. By combining active and passive rheology experiments, performed on the same…

生物物理 · 物理学 2019-12-10 P. Bohec , J. Tailleur , F. van Wijland , A. Richert , F. Gallet