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We analyse the nature of the confinement of an infinitely long (and finite) linear semiflexible homo-polymer chain confined in between two geometrical constraints (A&B) under good solvent condition in two dimensions. The constraints are…

软凝聚态物质 · 物理学 2017-10-16 Pramod Kumar Mishra

The longitudinal response of single semiflexible polymers to sudden changes in externally applied forces is known to be controlled by the propagation and relaxation of backbone tension. Under many experimental circumstances, realized, e.g.,…

软凝聚态物质 · 物理学 2011-02-25 Florian Thüroff , Benedikt Obermayer , Erwin Frey

The sequence-dependent elasticity of double-helical DNA on a nm length scale can be captured by the rigid base-pair model, whose strains are the relative position and orientation of adjacent base-pairs. Corresponding elastic potentials have…

生物大分子 · 定量生物学 2013-05-29 Nils B. Becker , Ralf Everaers

When translational symmetry is broken by bulk disorder, the topological nature of states in topological crystalline systems may change depending on the type of disorder that is applied. In this work, we characterize the phases of a…

强关联电子 · 物理学 2021-02-01 Saavanth Velury , Barry Bradlyn , Taylor L. Hughes

Topological constraints can affect both equilibrium and dynamic properties of polymer systems, and can play a role in the organization of chromosomes. Despite many theoretical studies, the effects of topological constraints on the…

软凝聚态物质 · 物理学 2014-12-12 Maxim Imakaev , Konstantin Tchourine , Sergei Nechaev , Leonid Mirny

We study the behavior of a flexible polymer chain in the presence of a low-molecular weight solvent in the vicinity of a liquid-gas critical point within the framework of a self-consistent field theory. The total free energy of the dilute…

统计力学 · 物理学 2015-07-29 Yu. A. Budkov , A. L. Kolesnikov , N. Georgi , M. G. Kiselev

The degree of randomness, or partial order, present in two-dimensional supramolecular arrays of isophthalate tetracarboxylic acids is shown to vary due to subtle chemical changes such as the choice of solvent or small differences in…

Conformations of a single-component bottle-brush polymer with a fully flexible backbone under poor solvent conditions are studied by molecular-dynamics simulations, using a coarse-grained bead-spring model with side chains of up to N=40…

软凝聚态物质 · 物理学 2013-06-25 Nikolaos G. Fytas , Panagiotis E. Theodorakis

Confinement is a versatile and well-established tool to study the properties of polymers either to understand biological processes or to develop new nano-biomaterials. We investigate the conformations of a semiflexible polymer ring in weak…

软凝聚态物质 · 物理学 2010-06-25 Katja Ostermeir , Karen Alim , Erwin Frey

We examine the phase transition of polymer adsorption as well as the underlying kinetics of polymer binding from dilute solutions on a structureless solid surface. The emphasis is put on the properties of regular multiblock copolymers,…

软凝聚态物质 · 物理学 2009-09-03 A. Milchev , V. Rostiashvili , S. Bhattacharya , T. Vilgis

We use the worm-like chain model to analytically calculate the linear response of a grafted semiflexible polymer to a uniform force field. The result is a function of the bending stiffness, the temperature, the total contour length, and the…

软凝聚态物质 · 物理学 2009-11-10 Panayotis Benetatos , Erwin Frey

In this paper, we present a new approach to the discrete version of the Wormlike Chain Model (WCM) of semiflexible polymers. Our solution to the model is based on a new computational technique called the Generalized Borel Transform (GBT)…

软凝聚态物质 · 物理学 2007-05-23 Marcelo Marucho , Gustavo A. Carri

We theoretically investigate the kinetics of the folding transition of a single semiflexible polymer. In the folding transition, the growth rate decrease with an increase in the number of monomers in a collapsed domain, suggesting that the…

软凝聚态物质 · 物理学 2009-11-13 Natsuhiko Yoshinaga

Polymer chains composing a polymer solution in strict two dimensions (2D) are characterized with irregular domain boundaries, whose fractal dimension ($\mathcal{D}^{\partial}$) varies with the area fraction of the solution and the solvent…

软凝聚态物质 · 物理学 2023-12-15 Lei Liu , Changbong Hyeon

We discuss the entropy of a circular polymer under a topological constraint. We call it the {\it topological entropy} of the polymer, in short. A ring polymer does not change its topology (knot type) under any thermal fluctuations. Through…

统计力学 · 物理学 2009-11-07 Miyuki K. Shimamura , Tetso Deguchi

Spherical confinement can act either stabilizing or destabilizing on the collapsed state of a semi-flexible polymer. General free-energy arguments suggest that the order of the unconstrained collapse transition is the distinguishing factor:…

软凝聚态物质 · 物理学 2018-11-14 Martin Marenz , Johannes Zierenberg , Wolfhard Janke

A geometric analysis of protein folding, which complements many of the models in the literature, is presented. We examine the process from unfolded strand to the point where the strand becomes self-interacting. A central question is how it…

数学物理 · 物理学 2008-09-13 Walter A. Simmons , Joel L. Weiner

Two-dimensional semiflexible polymer rings are studied both by imaging circular DNA adsorbed on a mica surface and by Monte Carlo simulations of phantom polymers as well as of polymers with finite thickness. Comparison of size and shape of…

生物大分子 · 定量生物学 2010-04-15 Fabian Drube , Karen Alim , Guillaume Witz , Giovanni Dietler , Erwin Frey

The shape assumed by a slender elastic structure is a function both of the geometry of the space in which it exists and the forces it experiences. We explore by experiments and theoretical analysis, the morphological phase-space of a…

软凝聚态物质 · 物理学 2023-12-11 S Ganga Prasath , Joel Marthelot , Rama Govindarajan , Narayanan Menon

Mixtures of nanoparticles and polymer-like objects are encountered in many nanotechnological applications and biological systems. We study the behavior of grafted polymer layers decorated by nanoparticles that are attracted to the polymers…

软凝聚态物质 · 物理学 2011-10-31 Michael G. Opferman , Rob D. Coalson , David Jasnow , Anton Zilman