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In the study of phase transitions a very few models are accessible to exact solution. In the most cases analytical simplifications have to be done or some numerical technique has to be used to get insight about their critical properties.…

统计力学 · 物理学 2017-05-24 B. V. Costa , L. A. S. Mól , J. C. S. Rocha

Mathematically, it takes an infinite amount of time for the transient solution of a diffusion equation to transition from initial to steady state. Calculating a \textit{finite} transition time, defined as the time required for the transient…

数值分析 · 数学 2017-07-19 Elliot J. Carr

A central goal of protein-folding theory is to predict the stochastic dynamics of transition paths --- the rare trajectories that transit between the folded and unfolded ensembles --- using only thermodynamic information, such as a…

生物大分子 · 定量生物学 2018-08-09 William M. Jacobs , Eugene I. Shakhnovich

Many-body quantum systems in nonequilibrium remain one of the frontiers of many-body physics. While there has been significant advances in describing the short-time evolution of these systems using a variety of different numerical…

量子物理 · 物理学 2021-01-05 Herbert F. Fotso , Eric Dohner , Alexander Kemper , James K. Freericks

We study a solution of interacting semiflexible polymers with curvature energy in poor-solvent conditions on the d-dimensional cubic lattice using mean-field theory and Monte Carlo computer simulations. Building upon past studies on a…

软凝聚态物质 · 物理学 2024-07-02 Davide Marcato , Achille Giacometti , Amos Maritan , Angelo Rosa

We study a simple sandpile model of active-absorbing state transitions in which a particle can hop out of a site only if the number of particles at that site is above a certain threshold. We show that the active phase has product measure…

统计力学 · 物理学 2009-11-10 Kavita Jain

Agent-based stochastic models for finite populations have recently received much attention in the game theory of evolutionary dynamics. Both the ultimate fixation and the pre-fixation transient behavior are important to a full understanding…

种群与进化 · 定量生物学 2015-03-17 Da Zhou , Hong Qian

Local diffusion coefficients in disordered systems such as spin glass systems and living cells are highly heterogeneous and may change over time. Such a time-dependent and spatially heterogeneous environment results in irreproducibility of…

统计力学 · 物理学 2016-12-21 Takuma Akimoto , Eiji Yamamoto

In this study, one-dimensional systems of masses connected by springs, i.e., spring-chain systems, are investigated numerically. The average kinetic energy of chain-end particles of these systems is larger than that of other particles,…

混沌动力学 · 物理学 2015-05-18 Tetsuro Konishi , Tatsuo Yanagita

We investigate the scaling of the interfacial adsorption of the two-dimensional Blume-Capel model using Monte Carlo simulations. In particular, we study the finite-size scaling behavior of the interfacial adsorption of the pure model at…

We study the relaxation dynamics of systems of straight, parallel crystal dislocations, starting from initially random and uncorrelated positions of the individual dislocations. A scaling model of the relaxation process is constructed by…

材料科学 · 物理学 2009-03-28 Ferenc F. Csikor , Michael Zaiser , Péter Dusán Ispánovity , István Groma

We implement a standard Monte Carlo algorithm to study the slow, equilibrium dynamics of a silica melt in a wide temperature regime, from 6100 K down to 2750 K. We find that the average dynamical behaviour of the system is in quantitative…

无序系统与神经网络 · 物理学 2009-11-13 Ludovic Berthier

Using a cluster-flipping Monte Carlo algorithm combined with a generalization of the histogram reweighting scheme of Ferrenberg and Swendsen, we have studied the equilibrium properties of the thermal random-field Ising model on a cubic…

凝聚态物理 · 物理学 2009-10-28 M. E. J. Newman , G. T. Barkema

Aggregations are emergent features common to many biological systems. Mathematical models to understand their emergence are consequently widespread, with the aggregation-diffusion equation being a prime example. Here we study the…

偏微分方程分析 · 数学 2023-09-28 Jonathan R. Potts , Kevin J. Painter

Transitions between ``glassy'' local minima of a model free-energy functional for a dense hard-sphere system are studied numerically using a ``microcanonical'' Monte Carlo method that enables us to obtain the transition probability as a…

软凝聚态物质 · 物理学 2009-10-30 Chandan Dasgupta , Oriol T. Valls

We describe a Monte Carlo procedure which allows sampling of the disjoint configuration spaces associated with crystalline and fluid phases, within a single simulation. The method utilises biased sampling techniques to enhance the…

统计力学 · 物理学 2009-10-31 N. B. Wilding , A. D. Bruce

Recently a local mean field theory for both eqilibrium and transport properties of the Coulomb glass was proposed [A. Amir et al., Phys. Rev. B 77, 165207 (2008); 80, 245214 (2009)]. We compare the predictions of this theory to the results…

无序系统与神经网络 · 物理学 2012-12-03 E. Bardalen , J. Bergli , Y. M. Galperin

Noise-induced transitions between metastable fixed points in systems evolving on multiple time scales are analyzed in situations where the time scale separation gives rise to a slow manifold with bifurcation. This analysis is performed…

统计力学 · 物理学 2017-10-05 Tobias Grafke , Eric Vanden-Eijnden

It has been demonstrated recently that supercooled liquids sharing simple structural features (e.g. pair distribution functions) may exhibit strikingly distinct dynamical behavior. Here we show that a more subtle structural feature…

统计力学 · 物理学 2012-06-04 Glen M. Hocky , Thomas E. Markland , David R. Reichman

Cell monolayers and epithelial tissues display slow dynamics during the liquid-glass transitions, a phenomenon with direct relevance to embryogenesis, tumor metastases, and wound healing. In active cells, persistent motion and cell…

软凝聚态物质 · 物理学 2024-01-25 Meng-Yuan Li , Yan-Wei Li