相关论文: Elastic wave propagation along DNA
The effect of electrostatic interactions on the stretching of DNA is investigated using a simple worm like chain model. In the limit of small force there are large conformational fluctuations which are treated using a self-consistent…
The binding of proteins onto DNA contributes to the shaping and packaging of genome as well as to the expression of specific genetic messages. With a view to understanding the interplay between the presence of proteins and the deformation…
The two strands of a DNA molecule with a repetitive sequence can pair into many different basepairing patterns. For perfectly periodic sequences, early bulk experiments of Poerschke indicate the existence of a sliding process, permitting…
Charge diffusion through desoxyribonucleic acid (DNA) is a physico-chemical phenomenon that on the one hand is being explored for technological purposes, on the other hand is applied by nature for various informational processes in life.…
This paper aims at a comprehensive understanding on the novel elastic property of double-stranded DNA (dsDNA) discovered very recently through single-molecule manipulation techniques. A general elastic model for double-stranded biopolymers…
When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…
In this study, the in-plane Bloch wave propagation and bandgaps in a finitely stretched square lattice were investigated numerically and theoretically. To be specific, the elastic band diagram was calculated for an infinite periodic…
The propagation of waves in soft dielectric elastomer layers is investigated. To this end incremental motions superimposed on homogeneous finite deformations induced by bias electric fields and pre-stretch are determined. First we examine…
This paper investigates the influence of elastic deformation on the velocity of body waves in compressible isotropic materials making use of the framework of acoustoelasticity. Specifically, it examines body waves propagating at an angle to…
In this paper we consider a physical system in which two DNA molecules braid about each other. The distance between the two molecular ends, on either side of the braid, is held at a distance much larger than supercoiling radius of the…
We construct a theoretical model for the dynamics of a microscale colloidal particle, modeled as an interval, moving horizontally on a DNA-coated surface, modelled as a line coated with springs that can stick to the interval. Averaging over…
This paper introduces the use of cable dynamics models as a means to explore the mechanics of DNA on long-length scales. It is on these length scales that DNA forms twisted and curved three-dimensional shapes known as supercoils and loops.…
We study the electronic properties of DNA by way of a tight-binding model applied to four particular DNA sequences. The charge transfer properties are presented in terms of localisation lengths, crudely speaking the length over which…
An electromagnetic wave-packet propagating in a linear, homogeneous, and isotropic medium changes shape while its envelope travels with different velocities at different points in spacetime. In general, a wave-packet can be described as a…
We observe regular patterns emerging across multiple length scales with high-concentration DNA solutions in microfluidic pillar arrays at low Reynolds numbers and high Deborah. Interacting vortices between pillars lead to long-range order…
The propagation of elastic waves in soft materials plays a crucial role in the spatio-temporal transmission of mechanical signals, e.g. in biological mechanotransduction or in the failure of marginal solids. At high Reynolds numbers $Re \gg…
DNA stretching experiments are usually interpreted using the worm-like chain model; the persistence length A appearing in the model is then interpreted as the elastic stiffness of the double helix. In fact the persistence length obtained by…
We present a new computational method for the accurate identification of the propagation modes and polarizations of elastic waves propagating in periodic solid structures and metamaterials. The method uses the eigenvectors calculated at…
In a communication scheme, there exist points at the transmitter and at the receiver where the wave is reduced to a finite set of functions of time which describe amplitudes and phases. For instance, the information is summarized in…
Flexomagnetism is the coupling between magnetism and strain gradients and is a technologically relevant phenomenon. We present a theory of elastic wave propagation in a linear elastic flexomagnetic material with microstructure and strain…