相关论文: On phylogenetic trees - a geometer's view

Phylogenetic diversity indices are commonly used to rank the elements in a collection of species or populations for conservation purposes. The derivation of these indices is typically based on some quantitative description of the…

We find a relation between a cubic hypersurface $Y$ and its Fano variety of lines $F(Y)$ in the Grothendieck ring of varieties. We prove that if the class of an affine line is not a zero-divisor in the Grothendieck ring of varieties, then…

We show that a Hilbert scheme of conics on a Fano fourfold double cover of $\mathbb{P}^2\times\mathbb{P}^2$ ramified along a divisor of bidegree $(2,2)$ admits a $\mathbb{P}^1$-fibration with base being a hyper-K\"{a}hler fourfold. We…

The reconstruction of phylogenetic trees from molecular sequence data relies on modelling site substitutions by a Markov process, or a mixture of such processes. In general, allowing mixed processes can result in different tree topologies…

The Ap\'ery numbers of Fano varieties are asymptotic invariants of their quantum differential equations. In this paper, we initiate a program to exhibit these invariants as (mirror to) limiting extension classes of higher cycles on the…

Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant…

We consider holomorphic foliations by curves on compact complex manifolds, for which we investigate the existence of projective structures along the leaves varying holomorphically (foliated projective structures), that satisfy particular…

We study weighted Fano fourfolds of K3 type realized as hypersurfaces in weighted projective spaces. Under the additional assumption that the singular locus has dimension at most one, we prove that only finitely many such families exist. We…

Let X be a complex, Gorenstein, Q-factorial, toric Fano variety. We prove two conjectures on the maximal Picard number of X in terms of its dimension and its pseudo-index, and characterize the boundary cases. Equivalently, we determine the…

Given arbitrary integers $k$ and $d$ with $0 \leq 2k \leq d$, we construct a Gorenstein Fano polytope $\Pc \subset \RR^d$ of dimension $d$ such that (i) its Ehrhart polynomial $i(\Pc, n)$ possesses $d$ distinct roots; (ii) $i(\Pc, n)$…

Congruences, or $2$-parameter families of lines in $3$-space are of interest in many situations, in particular in geometric optics. In this paper we consider elements of their geometry which are invariant under affine changes of…

We define several versions of a class of varieties $X_{\mathfrak{g}}$ attached to a complex reductive Lie algebra $\mathfrak{g}$, generalizing the Hilbert scheme of points on the plane. These include trigonometric and elliptic versions…

In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…

We introduce some natural families of distributions on rooted binary ranked plane trees with a view toward unifying ideas from various fields, including macroevolution, epidemiology, computational group theory, search algorithms and other…

We continue the study of projective Fra\"iss\'e limits developed by Irwin-Solecki and Panagiotopoulos-Solecki by investigating families of epimorphisms between finite trees and finite rooted trees. Ideas of monotone, confluent, and light…

We study phylogenetic invariants of models of evolution whose group of symmetries is the cyclic group with 3 elements. We prove that projective schemes corresponding to the ideal I of phylogenetic invariants of such a model and to its…

We give two simple geometric constructions of a smooth family of projective varieties with central fiber isomorphic to the horospherical variety of type $\mathrm{G}_2$ and all other fibers isomorphic to the isotropic orthogonal Grassmannian…

We study global log canonical thresholds on anticanonically embedded quasismooth weighted Fano threefold hypersurfaces having terminal quotient singularities to prove the existence of a Kahler-Einstein metric on most of them, and to produce…

Given a vector bundle $\mathcal E$ on a smooth projective variety $B$, the flag bundle $\mathcal F l(1,2,\mathcal E)$ admits two projective bundle structures over the Grassmann bundles $\mathcal G r(1, \mathcal E)$ and $G r(2, \mathcal E)$.…

The purpose of this note is twofold. First, we give a quick proof of Ballico-Chiantini's theorem stating that a Fano or Calabi-Yau variety of dimension at least 4 in codimension two is a complete intersection. Second, we improve Barth-Van…