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We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

种群与进化 · 定量生物学 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

Noisy dynamical models are employed to describe a wide range of phenomena. Since exact modeling of these phenomena requires access to their microscopic dynamics, whose time scales are typically much shorter than the observable time scales,…

统计力学 · 物理学 2015-11-18 Giovanni Volpe , Jan Wehr

The fluctuations in nonequilibrium systems are under intense theoretical and experimental investigation. Topical ``fluctuation relations'' describe symmetries of the statistical properties of certain observables, in a variety of models and…

统计力学 · 物理学 2011-09-08 Lamberto Rondoni , Carlos Mejia-Monasterio

We analyse the non-equilibrium distribution in dissipative dynamical systems at finite noise intensities. The effect of finite noise is described in terms of topological changes in the pattern of optimal paths. Theoretical predictions are…

统计力学 · 物理学 2009-11-10 A. Bandrivskyy , S. Beri , D. G. Luchinsky

Nonlinear diffusion is studied in the presence of multiplicative noise. The nonlinearity can be viewed as a ``wall'' limiting the motion of the diffusing field. A dynamic phase transition occurs when the system ``unbinds'' from the wall.…

统计力学 · 物理学 2009-10-30 M. A. Muñoz , T. Hwa

We have analyzed the effects of the addition of external noise to non-dynamical systems displaying intrinsic noise, and established general conditions under which stochastic resonance appears. The criterion we have found may be applied to a…

凝聚态物理 · 物理学 2016-08-15 J. M. G. Vilar , G. Gomila , J. M. Rubí

We analyze the noise induced synchronization between a collective variable characterizing a complex system with a finite number of interacting bistable units and time periodic driving forces. A random phase process associated to the…

统计力学 · 物理学 2009-11-13 José M. Casado , José Gómez-Ordóñez , Manuel Morillo

Understanding the causes and effects of spatial aggregation is one of the most fundamental problems in ecology. Aggregation is an emergent phenomenon arising from the interactions between the individuals of the population, able to sense…

种群与进化 · 定量生物学 2015-06-05 Juan A. Bonachela , Miguel A. Munoz , Simon A. Levin

Stochastic resonance is a well established phenomenon, which proves relevant for a wide range of applications, of broad trans-disciplinary breath. Consider a one dimensional bistable stochastic system, characterized by a deterministic…

统计力学 · 物理学 2023-10-17 Giuliano Migliorini , Duccio Fanelli

Phase transitions and effects of external noise on many body systems are one of the main topics in physics. In mean field coupled nonlinear dynamical stochastic systems driven by Brownian noise, various types of phase transitions including…

统计力学 · 物理学 2015-05-13 Akihisa Ichiki , Masatoshi Shiino

A large variety of microscopic or mesoscopic models lead to generic results that accommodate naturally within Boltzmann-Gibbs statistical mechanics (based on $S_1\equiv -k \int du p(u) \ln p(u)$). Similarly, other classes of models point…

统计力学 · 物理学 2009-11-07 Celia Anteneodo , Constantino Tsallis

Nonequilibrium systems driven by additive or multiplicative dichotomous Markov noise appear in a wide variety of physical and mathematical models. We review here some prototypical examples, with an emphasis on {\em analytically-solvable}…

统计力学 · 物理学 2009-11-11 Ioana Bena

Multistability is an inseparable feature of many physical, chemical and biological systems which are driven far from equilibrium. In these nonequilibrium systems, stochastic dynamics often induces switching between distinct states on…

适应与自组织系统 · 物理学 2017-11-01 Guram Gogia , Justin Burton

We discuss intrinsic noise effects in stochastic multiplicative-noise partial differential equations, which are qualitatively independent of the noise interpretation (Ito vs. Stratonovich), in particular in the context of noise-induced…

统计力学 · 物理学 2009-11-10 O. Carrillo , M. Ibanes , J. Garcia-Ojalvo , J. Casademunt , J. M. Sancho

We study the effects of noise on stationary pulse solutions (bumps) in spatially extended neural fields. The dynamics of a neural field is described by an integrodifferential equation whose integral term characterizes synaptic interactions…

斑图形成与孤子 · 物理学 2012-05-15 Zachary P. Kilpatrick , Bard Ermentrout

We study the fluctuation properties of a one-dimensional many-body quantum system composed of interacting bosons, and investigate the regimes where quantum noise or, respectively, thermal excitations are dominant. For the latter we develop…

量子气体 · 物理学 2010-07-16 H. -P. Stimming , N. J. Mauser , J. Schmiedmayer , I. E. Mazets

We present simple classical dynamical models to illustrate the idea of introducing a stochasticity with non-locality into the time variable. For stochasticity in time, these models include noise in the time variable but not in the "space"…

综合物理 · 物理学 2007-05-23 Toru Ohira

Noise-induced phase transitions are common in various complex systems, from physics to biology. In this article, we investigate the emergence of crucial events in noise-induced phase transition processes and their potential significance for…

数据分析、统计与概率 · 物理学 2023-06-28 Jacob D. Baxley , David R. Lambert , Mauro Bologna , Bruce J. West , Paolo Grigolini

This article deals with the approximation of a stochastic partial differential equation (SPDE) via amplitude equations. We consider an SPDE with a cubic nonlinearity perturbed by a general multiplicative noise that preserves the constant…

动力系统 · 数学 2019-10-08 Hongbo Fu , Dirk Blömker

A system of interacting particles described by stochastic differential equations is considered. As oppopsed to the usual model, where the noise perturbations acting on different particles are independent, here the particles are subject to…

偏微分方程分析 · 数学 2016-06-23 Michele Coghi , Franco Flandoli