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We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is…

计算复杂性 · 计算机科学 2007-05-23 Michael R. Fellows , Jens Gramm , Rolf Niedermeier

Network or graph structures are ubiquitous in the study of complex systems. Often, we are interested in complexity trends of these system as it evolves under some dynamic. An example might be looking at the complexity of a food web as…

信息论 · 计算机科学 2012-01-23 Russell K. Standish

Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…

数据结构与算法 · 计算机科学 2012-11-01 Travis Gagie , Paweł Gawrychowski , Christopher Hoobin , Simon J. Puglisi

The subword complexity of a word $w$ over a finite alphabet $\mathcal{A}$ is a function that assigns for each positive integer $n$, the number of distinct subwords of length $n$ in $w$. The subword complexity of a word is a good measure of…

组合数学 · 数学 2014-09-16 Hannah Vogel

The size $b$ of the smallest bidirectional macro scheme, which is arguably the most general copy-paste scheme to generate a given sequence, is considered to be the strictest reachable measure of repetitiveness. It is strictly lower-bounded…

数据结构与算法 · 计算机科学 2021-05-31 Gonzalo Navarro , Cristian Urbina

The branching rules between simple Lie algebras and its regular (maximal) simple subalgebras are studied. Two types of recursion relations for anomalous relative multiplicities are obtained. One of them is proved to be the factorized…

q-alg · 数学 2009-10-28 V. D. Lyakhovsky

For a word $S$, let $f(S)$ be the largest integer $m$ such that there are two disjoints identical (scattered) subwords of length $m$. Let $f(n, \Sigma) = \min \{f(S): S \text{is of length} n, \text{over alphabet} \Sigma \}$. Here, it is…

组合数学 · 数学 2012-04-11 Maria Axenovich , Yury Person , Svetlana Puzynina

The combined universal probability M(D) of strings x in sets D is close to max_{x \in D} M({x}): their ~ logs differ by at most D's information j = I(D:H) about the halting sequence H. Thus if all x have complexity K(x) > k, D carries > i…

计算复杂性 · 计算机科学 2018-12-03 Leonid A. Levin

The expected length of longest common subsequences is a problem that has been in the literature for at least twenty five years. Determining the limiting constants \gamma_k appears to be quite difficult, and the current best bounds leave…

概率论 · 数学 2007-05-23 Jonah Blasiak

The complexity of a graph is the number of its labeled spanning trees. In this work complexity is studied in settings that admit regular graphs. An exact formula is established linking complexity of the complement of a regular graph to…

组合数学 · 数学 2025-08-18 Gregory P Constantine , Gregory Magda

The study of Armstrong codes is motivated by the problem of understanding complexities of dependencies in relational database systems, where attributes have bounded domains. A $(q,k,n)$-Armstrong code is a $q$-ary code of length $n$ with…

组合数学 · 数学 2019-06-17 Yeow Meng Chee , Hui Zhang , Xiande Zhang

We present a simple regularization technique for Recurrent Neural Networks (RNNs) with Long Short-Term Memory (LSTM) units. Dropout, the most successful technique for regularizing neural networks, does not work well with RNNs and LSTMs. In…

神经与进化计算 · 计算机科学 2015-02-20 Wojciech Zaremba , Ilya Sutskever , Oriol Vinyals

This paper argues that the judicial use of formal language theory and grammatical inference are invaluable tools in understanding how deep neural networks can and cannot represent and learn long-term dependencies in temporal sequences.…

计算与语言 · 计算机科学 2017-10-17 Enes Avcu , Chihiro Shibata , Jeffrey Heinz

The (Mahler-Popken) complexity $\| n \|$ of a natural number $n$ is the smallest number of ones that can be used via combinations of multiplication and addition to express $n$, with parentheses arranged in such a way so as to form legal…

数论 · 数学 2024-09-20 John M. Campbell

We study several problems related to finding reset words in deterministic finite automata. In particular, we establish that the problem of deciding whether a shortest reset word has length k is complete for the complexity class DP. This…

形式语言与自动机理论 · 计算机科学 2011-02-21 Jörg Olschewski , Michael Ummels

Specificity is important for extracting collocations, keyphrases, multi-word and index terms [Newman et al. 2012]. It is also useful for tagging, ontology construction [Ryu and Choi 2006], and automatic summarization of documents [Louis and…

计算与语言 · 计算机科学 2014-03-11 Michael Stewart

We investigate the computational complexity of various problems for simple recurrent neural networks (RNNs) as formal models for recognizing weighted languages. We focus on the single-layer, ReLU-activation, rational-weight RNNs with…

形式语言与自动机理论 · 计算机科学 2018-03-06 Yining Chen , Sorcha Gilroy , Andreas Maletti , Jonathan May , Kevin Knight

A nearly linear recurrence sequence (nlrs) is a complex sequence $(a_n)$ with the property that there exist complex numbers $A_0$,$\ldots$, $A_{d-1}$ such that the sequence $\big(a_{n+d}+A_{d-1}a_{n+d-1}+\cdots +A_0a_n\big)_{n=0}^{\infty}$…

数论 · 数学 2016-08-02 Shigeki Akiyama , Jan-Hendrik Evertse , Attila Pethő

In this paper we give a criterion by which one can conclude that every reduction of a basic term to normal form has the same length. As a consequence, the number of steps to reach the normal form is independent of the chosen strategy. In…

计算机科学中的逻辑 · 计算机科学 2012-04-26 Hans Zantema

Document listing on string collections is the task of finding all documents where a pattern appears. It is regarded as the most fundamental document retrieval problem, and is useful in various applications. Many of the fastest-growing…

数据结构与算法 · 计算机科学 2019-02-21 Dustin Cobas , Gonzalo Navarro