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The influence of networks topology on collective properties of dynamical systems defined upon it is studied in the thermodynamic limit. A network model construction scheme is proposed where the number of links, the average eccentricity and…

物理与社会 · 物理学 2015-05-25 Sarah De Nigris , Xavier Leoncini

Most social, technological and biological networks are embedded in a finite dimensional space, and the distance between two nodes influences the likelihood that they link to each other. Indeed, in social systems, the chance that two…

物理与社会 · 物理学 2018-06-27 Paul Balister , Chaoming Song , Oliver Riordan , Bela Bollobas , Albert-Laszlo Barabasi

We investigate a phase transition from linear to nonlinear information processing in echo state networks, a widely used framework in reservoir computing. The network consists of randomly connected recurrent nodes perturbed by a noise and…

无序系统与神经网络 · 物理学 2025-11-25 Masaya Matsumura , Taiki Haga

We consider a class of adaptive network models where links can only be created or deleted between nodes in different states. These models provide an approximate description of a set of systems where nodes represent agents moving in physical…

物理与社会 · 物理学 2016-08-24 Li Chen , Cristián Huepe , Thilo Gross

The organization of interactions in complex systems can be described by networks connecting different units. These graphs are useful representations of the local and global complexity of the underlying systems. The origin of their…

物理与社会 · 物理学 2015-09-30 Luís F Seoane , Ricard Solé

Modular networks, such as critical infrastructures, are often built from distinct, densely connected modules (e.g., cities) that are sparsely interconnected. When such networks are gradually and randomly disrupted under a percolation…

物理与社会 · 物理学 2026-02-12 Yael Kfir-Cohen , Dana Ben Porath , Bnaya Gross , Sergey Buldyrev , Shlomo Havlin

Boolean networks are an important class of computational models for molecular interaction networks. Boolean canalization, a type of hierarchical clustering of the inputs of a Boolean function, has been extensively studied in the context of…

分子网络 · 定量生物学 2024-07-09 David Murrugarra , Elena S. Dimitrova

A model of cellular metabolism due to S. Kauffman is analyzed. It consists of a network of Boolean gates randomly assembled according to a probability distribution. It is shown that the behavior of the network depends very critically on…

适应与自组织系统 · 物理学 2009-11-07 James F. Lynch

Successfully anticipating sudden major changes in complex systems is a practical concern. Such complex systems often form a heterogeneous network, which may show multistage transitions in which some nodes experience a regime shift earlier…

物理与社会 · 物理学 2023-06-27 Neil G. MacLaren , Prosenjit Kundu , Naoki Masuda

A variant of Kauffman's model of cellular metabolism is presented. It is a randomly generated network of boolean gates, identical to Kauffman's except for a small bias in favor of boolean gates that depend on at most one input. The bias is…

adap-org · 物理学 2009-10-22 James F. Lynch

Random Boolean Network has been used to find out regulation patterns of genes in organism. his approach is very interesting to use in a game such as N Person PD. Here we assume that action is influenced by input in the form of choices of…

无序系统与神经网络 · 物理学 2007-05-23 Hokky Situngkir , Deni Khanafiah

Canalization is a classic concept in Developmental Biology that is thought to be an important feature of evolving systems. In a Boolean network it is a form of network robustness in which a subset of the input signals control the behavior…

分子网络 · 定量生物学 2015-05-28 Matthew D. Reichl , Kevin E. Bassler

Random walks serve as important tools for studying complex network structures, yet their dynamics in cases where transition probabilities are not static remain under explored and poorly understood. Here we study nonlinear random walks that…

混沌动力学 · 物理学 2022-06-14 Digesh Chitrakar , Per Sebastian Skardal

We realize autonomous Boolean networks by using logic gates in their autonomous mode-of-operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be…

适应与自组织系统 · 物理学 2013-12-16 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

We consider a model of large regulatory gene expression networks where the thresholds activating the sigmoidal interactions between genes and the signs of these interactions are shuffled randomly. Such an approach allows for a qualitative…

分子网络 · 定量生物学 2007-05-23 D. Volchenkov , R. Lima

This short paper presents an abstract, tunable model of genomic structural change within the cell lifecycle and explores its use with simulated evolution. A well-known Boolean model of genetic regulatory networks is extended to include…

计算工程、金融与科学 · 计算机科学 2012-01-18 Larry Bull

There is a pressing need for a description of complex systems that includes considerations of the underlying network of interactions, for a diverse range of biological, technological and other networks. In this work relationships between…

无序系统与神经网络 · 物理学 2007-05-23 Samantha Jenkins , Steven R. Kirk

We study the properties of the distance between attractors in Random Boolean Networks, a prominent model of genetic regulatory networks. We define three distance measures, upon which attractor distance matrices are constructed and their…

神经与进化计算 · 计算机科学 2010-11-23 Andrea Roli , Stefano Benedettini , Roberto Serra , Marco Villani

A classification of critical behavior is provided in systems for which the renormalization group equations are control-parameter dependent. It describes phase transitions in networks with a recursive, hierarchical structure but appears to…

统计力学 · 物理学 2015-05-12 Stefan Boettcher , Trent Brunson

We define and study a few properties of a class of random automata networks. While regular finite one-dimensional cellular automata are defined on periodic lattices, these automata networks, called randomized cellular automata, are defined…

元胞自动机与格子气 · 物理学 2009-11-13 Nino Boccara