相关论文: Incorporating indel channels into average-case ana…
We study the planted clique problem in which a clique of size k is planted in an Erd\H{o}s-R\'enyi graph G(n, 1/2), and one is interested in either detecting or recovering this planted clique. This problem is interesting because it is…
Hyperparameter tuning is a common technique for improving the performance of neural networks. Most techniques for hyperparameter search involve an iterated process where the model is retrained at every iteration. However, the expected…
Consider the approximate sparse recovery problem: given Ax, where A is a known m-by-n dimensional matrix and x is an unknown (approximately) sparse n-dimensional vector, recover an approximation to x. The goal is to design the matrix A such…
Channels with synchronization errors, such as deletion and insertion errors, are crucial in DNA storage, data reconstruction, and other applications. These errors introduce memory to the channel, complicating its capacity analysis. This…
Let $S_d(n)$ denote the minimum number of wires of a depth-$d$ (unbounded fan-in) circuit encoding an error-correcting code $C:\{0, 1\}^n \to \{0, 1\}^{32n}$ with distance at least $4n$. G\'{a}l, Hansen, Kouck\'{y}, Pudl\'{a}k, and Viola…
In the problem of variable-length $\delta$-channel resolvability, the channel output is approximated by encoding a variable-length uniform random number under the constraint that the variational distance between the target and approximated…
The goal of the trace reconstruction problem is to recover a string $x\in\{0,1\}^n$ given many independent {\em traces} of $x$, where a trace is a subsequence obtained from deleting bits of $x$ independently with some given probability…
We investigate deterministic identification over arbitrary memoryless channels under the constraint that the error probabilities of first and second kind are exponentially small in the block length $\mathbf{n}$, controlled by reliability…
In the recent years, DNA has emerged as a potentially viable storage technology. DNA synthesis, which refers to the task of writing the data into DNA, is perhaps the most costly part of existing storage systems. Accordingly, this high cost…
In this work, we obtain performance guarantees for modified-CS and for its improved version, modified-CS-Add-LS-Del, for recursive reconstruction of a time sequence of sparse signals from a reduced set of noisy measurements available at…
Memoryless channels with deletion errors as defined by a stochastic channel matrix allowing for bit drop outs are considered in which transmitted bits are either independently deleted with probability $d$ or unchanged with probability…
This paper presents a new construction of error correcting codes which achieves optimal recovery of a streaming source over a packet erasure channel. The channel model considered is the sliding window erasure model, with burst and arbitrary…
The Path Contraction and Cycle Contraction problems take as input an undirected graph $G$ with $n$ vertices, $m$ edges and an integer $k$ and determine whether one can obtain a path or a cycle, respectively, by performing at most $k$ edge…
We study codes that can correct backtracking errors during nanopore sequencing. In this channel, a sequence of length $n$ over an alphabet of size $q$ is being read by a sliding window of length $\ell$, where from each window we obtain only…
The algorithm analysed by Na\"{i}mi, Trehe and Arnold was the very first distributed algorithm to solve the mutual exclusion problem in complete networks by using a dynamic logical tree structure as its basic distributed data structure,…
Motivation: Predicting the secondary structure of an RNA sequence is useful in many applications. Existing algorithms (based on dynamic programming) suffer from a major limitation: their runtimes scale cubically with the RNA length, and…
We study classic streaming and sparse recovery problems using deterministic linear sketches, including l1/l1 and linf/l1 sparse recovery problems (the latter also being known as l1-heavy hitters), norm estimation, and approximate inner…
Genome rearrangement distances are an established method in genome comparison. Works in this area may include various rearrangement operations representing large-scale mutations, gene orientation information, the number of nucleotides in…
Error-correcting codes resilient to synchronization errors such as insertions and deletions are known as insdel codes. Due to their important applications in DNA storage and computational biology, insdel codes have recently become a focal…
We study the problem of computing a longest increasing subsequence in a sequence $S$ of $n$ distinct elements in the presence of persistent comparison errors. In this model, every comparison between two elements can return the wrong result…