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Predicting the adaptation of populations to a changing environment is crucial to assess the impact of human activities on biodiversity. Many theoretical studies have tackled this issue by modeling the evolution of quantitative traits…

偏微分方程分析 · 数学 2022-06-28 Jimmy Garnier , O Cotto , T Bourgeron , E Bouin , T Lepoutre , O Ronce , V Calvez

Continuum models for the spatial dynamics of growing cell populations have been widely used to investigate the mechanisms underpinning tissue development and tumour invasion. These models consist of nonlinear partial differential equations…

组织与器官 · 定量生物学 2019-07-15 Mark AJ Chaplain , Tommaso Lorenzi , Fiona R Macfarlane

The first chapter concerns monotype population models. We first study general birth and death processes and we give non-explosion and extinction criteria, moment computations and a pathwise representation. We then show how different scales…

概率论 · 数学 2017-07-06 Vincent Bansaye , Sylvie Méléard

Phenotypes of individuals in a population of organisms are not fixed. Phenotypic fluctuations, which describe temporal variation of the phenotype of an individual or individual-to-individual variation across a population, are present in…

种群与进化 · 定量生物学 2018-08-15 Hong-Yan Shih , Harry Mickalide , David T. Fraebel , Nigel Goldenfeld , Seppe Kuehn

This paper aims to develop practical applications of the model for the highly technical measure-valued populations developed by the authors in \cite{FanEtal20}. We consider the problem of estimation of parameters in the general age and…

统计理论 · 数学 2025-06-30 Jie Yen Fan , Kais Hamza , Fima C. Klebaner , Ziwen Zhong

We explore the effect of finite population sampling in design problems with many variables cross-classified in many ways. In particular, we investigate designs where we wish to sample individuals belonging to different groups for which the…

统计方法学 · 统计学 2017-11-30 Simon C. Shaw , Michael Goldstein

We are interested in modelling Darwinian evolution, resulting from the interplay of phenotypic variation and natural selection through ecological interactions. Our models are rooted in the microscopic, stochastic description of a population…

概率论 · 数学 2016-08-16 Nicolas Champagnat , Régis Ferrière , Sylvie Méléard

We study a size-structured population model in which individual cells grow at a rate determined by a fluctuating internal variable (e.g., gene expression levels). Many previous models of phenotypically heterogeneous populations can be…

统计力学 · 物理学 2026-04-06 Ethan Levien , Yaïr Hein , Farshid Jafarpour

We introduce a broad class of spatial models to describe how spatially heterogeneous populations live, die, and reproduce. Individuals are represented by points of a point measure, whose birth and death rates can depend both on spatial…

Estimators computed from adaptively collected data do not behave like their non-adaptive brethren. Rather, the sequential dependence of the collection policy can lead to severe distributional biases that persist even in the infinite data…

机器学习 · 统计学 2020-01-06 Yash Deshpande , Lester Mackey , Vasilis Syrgkanis , Matt Taddy

Due to the rapid growth of urban areas in the past decades, it has become increasingly important to model and monitor urban growth in mega cities. Although several researchers have proposed models for simulating urban growth, they have been…

其他计算机科学 · 计算机科学 2018-05-30 Saptarshi Pal , Soumya K Ghosh

Since steep declines in a population's size also typically alter its composition, population bottlenecks are considered highly important for evolution. However, despite such significance, the mechanisms governing the impact of a given…

种群与进化 · 定量生物学 2022-06-28 Emanuele Crosato , Jeffrey N. Philippson , Shashi Thutupalli , Richard G. Morris

We propose new analytical tools for describing growth-rate distributions generated by stationary time-series. Our analysis shows how deviations from normality are not pathological behaviour, as suggested by some traditional views, but…

数据分析、统计与概率 · 物理学 2026-04-01 Edgardo Brigatti

Which factors govern the evolution of mutation rates and emergence of species? Here, we address this question using a first principles model of life where population dynamics of asexual organisms is coupled to molecular properties and…

种群与进化 · 定量生物学 2009-11-13 Muyoung Heo , Louis Kang , Eugene I. Shakhnovich

We consider a branching model in discrete time where each individual has a trait in some general state space. Both the reproduction law and the trait inherited by the offsprings may depend on the trait of the mother and the environment. We…

概率论 · 数学 2013-11-26 Vincent Bansaye

We aim to understand the evolution of the genetic composition of cancer cell populations. To achieve this, we consider an individual-based model representing a cell population where cells divide, die and mutate along the edges of a finite…

概率论 · 数学 2025-02-18 Vianney Brouard

Single-cell lineage tracking strategies enabled by recent experimental technologies have produced significant insights into cell fate decisions, but lack the quantitative framework necessary for rigorous statistical analysis of mechanistic…

Dynamic models are widely used to mathematically describe biological phenomena that evolve over time. One important area of application is leukaemia research, where leukaemia cells are genetically modified in preclinical studies to explore…

统计方法学 · 统计学 2026-02-02 Julian Wäsche , Romina Ludwig , Irmela Jeremias , Christiane Fuchs

We study time continuous branching processes with exponentially distributed lifetimes, with two types of cells that proliferate according to binary fission. A range of possible system dynamics are considered, each of which is characterized…

概率论 · 数学 2022-04-27 Nam H Nguyen , Marek Kimmel

Cellular differentiation and evolution are stochastic processes that can involve multiple types (or states) of particles moving on a complex, high-dimensional state-space or "fitness" landscape. Cells of each specific type can thus be…

种群与进化 · 定量生物学 2014-11-17 Tom Chou , Yu Wang