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We consider an age-size structured cell population model based on the cell cycle length. The model is described by a first order partial differential equation with initial-boundary conditions. Using the theory of semigroups of positive…

偏微分方程分析 · 数学 2022-06-15 Katarzyna Pichór , Ryszard Rudnicki

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

分子网络 · 定量生物学 2020-01-01 Somya Mani , Tsvi Tlusty

We analyze a modification of the Richards growth model by introducing a time-dependent perturbation in the growth rate. This modification becomes effective at a special switching time, which represents the first-crossing-time of the…

应用统计 · 统计学 2024-10-31 Antonio Di Crescenzo , Paola Paraggio , Francisco Torres-Ruiz

We consider a binary branching process structured by a stochastic trait that evolves according to a diffusion process that triggers the branching events, in the spirit of Kimmel's model of cell division with parasite infection. Based on the…

统计理论 · 数学 2019-02-27 Marc Hoffmann , Aline Marguet

In panel experiments, we randomly assign units to different interventions, measuring their outcomes, and repeating the procedure in several periods. Using the potential outcomes framework, we define finite population dynamic causal effects…

统计方法学 · 统计学 2021-05-28 Iavor Bojinov , Ashesh Rambachan , Neil Shephard

In machine learning, a bias occurs whenever training sets are not representative for the test data, which results in unreliable models. The most common biases in data are arguably class imbalance and covariate shift. In this work, we aim to…

机器学习 · 计算机科学 2018-04-04 Patrick Glauner , Radu State , Petko Valtchev , Diogo Duarte

When confronted with an undesired cell population, such as bacterial infections or tumors, we seek the most effective treatment, designed to eliminate the population as rapidly as possible. A common practice is to monitor the cells…

生物物理 · 物理学 2025-01-23 Uzi Harush , Ravid Straussman , Baruch Barzel

Epidemiologic screening programs often make use of tests with small, but non-zero probabilities of misdiagnosis. In this article, we assume the target population is finite with a fixed number of true cases, and that we apply an imperfect…

统计方法学 · 统计学 2024-04-22 Lin Ge , Yuzi Zhang , Lance A. Waller , Robert H. Lyles

Finite mixture distributions arise in sampling a heterogeneous population. Data drawn from such a population will exhibit extra variability relative to any single subpopulation. Statistical models based on finite mixtures can assist in the…

统计方法学 · 统计学 2024-01-19 Andrew M. Raim , Nagaraj K. Neerchal , Jorge G. Morel

An early burst of speciation followed by a subsequent slowdown in the rate of diversification is commonly inferred from molecular phylogenies. This pattern is consistent with some verbal theory of ecological opportunity and adaptive…

种群与进化 · 定量生物学 2015-06-11 Matthew W. Pennell , Brice A. J. Sarver , Luke J. Harmon

We consider the problem of estimating the division rate of a size-structured population in a nonparametric setting. The size of the system evolves according to a transport-fragmentation equation: each individual grows with a given transport…

We construct a pathwise formulation of a growing population of cells, based on two different samplings of lineages within the population, namely the forward and backward samplings. We show that a general symmetry relation, called…

种群与进化 · 定量生物学 2021-11-03 Arthur Genthon , David Lacoste

We consider a class of evolution equations describing population dynamics in the presence of a carrying capacity depending on the population with delay. In an earlier work, we presented an exhaustive classification of the logistic equation…

种群与进化 · 定量生物学 2015-06-19 V. I. Yukalov , E. P. Yukalova , D. Sornette

Infinite population models are important tools for studying population dynamics of evolutionary algorithms. They describe how the distributions of populations change between consecutive generations. In general, infinite population models…

神经与进化计算 · 计算机科学 2015-09-29 Bo Song , Victor O. K. Li

We study a mathematical model describing the growth process of a population structured by age and a phenotypical trait, subject to aging, competition between individuals and rare mutations. Our goals are to describe the asymptotic behaviour…

偏微分方程分析 · 数学 2020-04-17 Samuel Nordmann , Benoît Perthame , Cécile Taing

Infinitely many distinct trait values may arise in populations bearing quantitative traits, and modeling their population dynamics is thus a formidable task. While classical models assume fixed or infinite population size, models in which…

种群与进化 · 定量生物学 2025-05-08 Ananda Shikhara Bhat

The modeling of time series is becoming increasingly critical in a wide variety of applications. Overall, data evolves by following different patterns, which are generally caused by different user behaviors. Given a time series, we define…

机器学习 · 计算机科学 2022-07-13 Wenjie Hu , Jianping Huang , Liang Wu , Yang Yang , Zongtao Liu , Zhanlin Sun , Bingshen Yao , Ke Chen

In unicellular organisms such as bacteria and in most viruses, mutations mainly occur during reproduction. Thus, genotypes with a high birth rate should have a higher mutation rate. However, standard models of asexual adaptation such as the…

偏微分方程分析 · 数学 2021-11-10 Florian Patout , R Forien , M Alfaro , J Papaïx , L Roques

Deterministic continuum models formulated in terms of non-local partial differential equations for the evolutionary dynamics of populations structured by phenotypic traits have been used recently to address open questions concerning the…

Estimating the counterfactual outcome of treatment is essential for decision-making in public health and clinical science, among others. Often, treatments are administered in a sequential, time-varying manner, leading to an exponentially…

机器学习 · 统计学 2024-07-16 Shenghao Wu , Wenbin Zhou , Minshuo Chen , Shixiang Zhu