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Signal transducers and activators of transcription (STATs) are key molecular determinants of T cell fate and effector function. A number of inflammatory diseases are characterized by an altered balance of T cell phenotypes and cytokine…

Immune system is the most important defense system to resist human pathogens. In this paper we present an immune model with bipartite graphs theory. We collect data through COPE database and construct an immune cell- mediators network. The…

适应与自组织系统 · 物理学 2007-12-06 Sheng-Rong Zou , Yu-Jing Peng , Zhong-Wei Guo , Ta Zhou , Chang-gui Gu , Da-Ren He

Atherosclerosis is one of the principle pathologies of cardiovascular disease with blood cholesterol a significant risk factor. The World Health Organisation estimates that approximately 2.5 million deaths occur annually due to the risk…

组织与器官 · 定量生物学 2015-10-08 Andrew Parton , Victoria McGilligan , Maurice OKane , Francina R Baldrick , Steven Watterson

In this work, we propose a dynamical systems perspective on the modeling of sepsis and its organ-damaging consequences. We develop a functional two-layer network model for sepsis based upon the interaction of parenchymal cells and immune…

适应与自组织系统 · 物理学 2022-03-28 Rico Berner , Jakub Sawicki , Max Thiele , Thomas Löser , Eckehard Schöll

Cytotoxic T lymphocytes (T cells) and natural killer cells form a tight contact, the immunological synapse (IS), with target cells, where they release their lytic granules containing perforin/granzyme and cytokine containing vesicles.…

生物物理 · 物理学 2022-04-20 Ivan Hornak , Heiko Rieger

The problem of dynamic prediction with time-dependent covariates, given by biomarkers, repeatedly measured over time, has received much attention over the last decades. Two contrasting approaches have become in widespread use. The first is…

统计方法学 · 统计学 2021-03-31 Hein Putter , Hans C. van Houwelingen

Cells with the same genome can exist in different phenotypes. and can change between distinct phenotypes when subject to specific stimuli and microenvironments. Some examples include cell differentiation during development, reprogramming…

定量方法 · 定量生物学 2022-09-28 Jianhua Xing

Estimation of division and death rates of lymphocytes in different conditions is vital for quantitative understanding of the immune system. Deuterium, in the form of deuterated glucose or heavy water, can be used to measure rates of…

种群与进化 · 定量生物学 2015-05-13 Vitaly V. Ganusov , Jose Borghans , Rob De Boer

In this work we propose and investigate a family of models, which admits as particular cases some well known mathematical models of tumor-immune system interaction, with the additional assumption that the influx of immune system cells may…

组织与器官 · 定量生物学 2015-06-17 Alberto d'Onofrio

Despite its high prevalence and impact on the lives of those affected, a complete understanding of the cause of inflammatory bowel disease (IBD) is lacking. In this paper, we investigate a novel mechanism which proposes that mutant…

偏微分方程分析 · 数学 2025-01-16 Blaine van Rensburg , David J. Needham , Fabian Spill , Alexandra Tzella

Viral infections trigger complex immune responses with heterogeneous outcomes shaped by nonlinear feedbacks. An ordinary differential equation model is developed to investigate immune response dynamics during viral infection, incorporating…

定量方法 · 定量生物学 2025-10-08 Xiaoxin Wang , Kai Kang , Leyi Zhang , Changjing Zhuge

Memory has a great impact on the evolution of every process related to human societies. Among them, the evolution of an epidemic is directly related to the individuals' experiences. Indeed, any real epidemic process is clearly sustained by…

物理与社会 · 物理学 2017-03-10 M. Saeedian , M. Khalighi , N. Azimi-Tafreshi , G. R. Jafari , M. Ausloos

Multiple Instance Learning (MIL) is a cornerstone approach in computational pathology (CPath) for generating clinically meaningful slide-level embeddings from gigapixel tissue images. However, MIL often struggles with small, weakly…

计算机视觉与模式识别 · 计算机科学 2025-06-12 Daniel Shao , Richard J. Chen , Andrew H. Song , Joel Runevic , Ming Y. Lu , Tong Ding , Faisal Mahmood

With reference to a stratified case-control procedure based on a binary variable of primary interest, we derive the expression of the distortion induced by the sampling design on the parameters of the logistic model of a secondary variable.…

统计方法学 · 统计学 2024-01-18 Marco Doretti , Minna Genbäck , Elena Stanghellini

Drug-induced liver injury (DILI) is a major public health issue and of serious concern for the pharmaceutical industry. Early detection of signs of a drug's potential for DILI is vital for pharmaceutical companies' evaluation of new drugs.…

应用统计 · 统计学 2014-05-27 Ioannis Papastathopoulos , Jonathan A. Tawn

A mathematical model for the quantitative analysis of cancer immune interaction, considering the role of antibodies has been proposed in this paper. The model is based on the clinical evidence, which states that antibodies can directly kill…

定量方法 · 定量生物学 2016-10-19 Shiferaw Feyissa , Sandip Banerjee

Lymphocyte populations, stimulated in vitro or in vivo, grow as cells divide. Stochastic models are appropriate because some cells undergo multiple rounds of division, some die, and others of the same type in the same conditions do not…

细胞行为 · 定量生物学 2021-12-02 Giulia Belluccini , Martín López-García , Grant Lythe , Carmen Molina-París

We propose a mathematical model for estimating biological damage caused by low-dose irradiation. We understand that the Linear Non Threshold (LNT) hypothesis is realized only in the case of no recovery effects. In order to treat the…

生物物理 · 物理学 2012-10-08 Yuichiro Manabe , Kento Ichikawa , Masako Bando

Many of the chemical reactions that take place within a living cell are irreversible. Due to evolutionary pressures, the number of allowable reactions within these systems are highly constrained and thus the resulting metabolic networks…

分子网络 · 定量生物学 2013-03-04 Jonathan J Crofts , Ernesto Estrada

Purpose: To improve repeatability and reproducibility across acquisition parameters and reduce bias in quantitative susceptibility mapping (QSM) of the liver, through development of an optimized regularized reconstruction algorithm for…