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The backbone of most proteins forms an open curve. To study their entanglement, a common strategy consists in searching for the presence of knots in their backbones using topological invariants. However, this approach requires to close the…

生物大分子 · 定量生物学 2018-06-06 Julien Dorier , Dimos Goundaroulis , Fabrizio Benedetti , Andrzej Stasiak

This note explores two questions: (1) Which bigraded groups arise as the knot Floer homology of a knot in the three-sphere? (2) Given a knot, how many distinct knots share its Floer homology? Regarding the first, we show there exist…

几何拓扑 · 数学 2017-07-31 Matthew Hedden , Liam Watson

Optical links and knots have attracted growing attention owing to their exotic topologic features and promising applications in next-generation information transfer and storage. However, current protocols for optical topology realization…

By using double branched covers, we prove that there is a 1-1 correspondence between the set of knotoids in the 2-sphere, up to orientation reversion and rotation, and knots with a strong inversion, up to conjugacy. This correspondence…

几何拓扑 · 数学 2019-09-26 Agnese Barbensi , Dorothy Buck , Heather A. Harrington , Marc Lackenby

We conclude the multiple fibration problem for closed orientable Seifert three-orbifolds, namely the determination of all the inequivalent fibrations that such an orbifold may admit. We treat here geometric orbifolds with geometries…

几何拓扑 · 数学 2023-02-14 Oliviero Malech , Mattia Mecchia , Andrea Seppi

Given a connected cobordism between two knots in the 3-sphere, our main result is an inequality involving torsion orders of the knot Floer homology of the knots, and the number of local maxima and the genus of the cobordism. This has…

几何拓扑 · 数学 2020-11-04 András Juhász , Maggie Miller , Ian Zemke

We model proteins with intramolecular bonds, such as disulfide bridges, using the concept of bonded knots -- closed loops in three-dimensional space equipped with additional bonds that connect different segments of the knot. We extend the…

几何拓扑 · 数学 2025-02-27 Boštjan Gabrovšek , Matic Simonič

Homomorphic expansions are combinatorial invariants of knotted objects, which are universal in the sense that all finite-type (Vassiliev) invariants factor through them. Homomorphic expansions are also important as bridging objects between…

量子代数 · 数学 2022-11-22 Zsuzsanna Dancso , Tamara Hogan , Marcy Robertson

While the problem of computing the genus of a knot is now fairly well understood, no algorithm is known for its four-dimensional variants, both in the smooth and in the topological locally flat category. In this article, we investigate a…

计算几何 · 计算机科学 2024-03-19 Pierre Dehornoy , Corentin Lunel , Arnaud de Mesmay

We determine the relationship between the contact structure induced by a fibered knot, K, in the three-sphere and the contact structures induced by its various cables. Understanding this relationship allows us to classify fibered cable…

几何拓扑 · 数学 2008-04-29 Matthew Hedden

Long, flexible physical filaments are naturally tangled and knotted, from macroscopic string down to long-chain molecules. The existence of knotting in a filament naturally affects its configuration and properties, and may be very stable or…

生物大分子 · 定量生物学 2016-11-21 Keith Alexander , Alexander J Taylor , Mark R Dennis

Here we study geodesics connecting two given points on odd-dimensional spheres respecting the Hopf fibration. This geodesic boundary value problem is completely solved in the case of 3-dimensional sphere and some partial results are…

微分几何 · 数学 2015-05-20 Der-Chen Chang , Irina Markina , Alexander Vasil'ev

We use technology from sutured manifold theory and the theory of Heegaard splittings to relate genus reducing crossing changes on knots in S^3 to twists on surfaces arising in circular Heegaard splittings for knot complements. In a separate…

几何拓扑 · 数学 2012-10-23 Alexander Coward

We consider homologically essential simple closed curves on Seifert surfaces of genus one knots in $S^3$, and in particular those that are unknotted or slice in $S^3$. We completely characterize all such curves for most twist knots: they…

几何拓扑 · 数学 2024-07-24 Subhankar Dey , Veronica King , Colby T. Shaw , Bülent Tosun , Bruce Trace

Topological solitons are relevant in several areas of physics [1]. Recently, these configurations have been investigated in contexts as diverse as hydrodynamics [2], Bose-Einstein condensates [3], ferromagnetism [4], knotted light [5] and…

数学物理 · 物理学 2016-10-12 Miguel Bezares , Érico Goulart , Gonzalo Palomera , Daniel J. Pons , Enrique G. Reyes

The topological underpinnings are presented for a new algorithm which answers the question: `Is a given knot the unknot?' The algorithm uses the braid foliation technology of Bennequin and of Birman and Menasco. The approach is to consider…

几何拓扑 · 数学 2014-11-11 Joan S. Birman , Michael D. Hirsch

We discuss various aspects of `braid spaces' or configuration spaces of unordered points on manifolds. First we describe how the homology of these spaces is affected by puncturing the underlying manifold, hence extending some results of…

代数拓扑 · 数学 2010-04-28 Sadok Kallel

We study a novel type of braid groups on a closed orientable surface $\Sigma$. These are fundamental groups of certain manifolds that are hybrids between symmetric products and configuration spaces of points on $\Sigma$; a class of examples…

几何拓扑 · 数学 2016-05-31 Marcel Bökstedt , Nuno M. Romão

We study 3d $\mathcal{N}=2$ supersymmetric gauge theories on closed oriented Seifert manifold---circle bundles over an orbifold Riemann surface---, with a gauge group G given by a product of simply-connected and/or unitary Lie groups. Our…

高能物理 - 理论 · 物理学 2018-11-14 Cyril Closset , Heeyeon Kim , Brian Willett

We introduce a new algebraic topological technique to detect non-fibred knots in the three sphere using the twisted Alexander invariants. As an application, we show that for any Seifert matrix of a knot with a nontrivial Alexander…

几何拓扑 · 数学 2007-05-23 Jae Choon Cha