相关论文: Hierarchy of codon usage frequencies from codon-an…
Most amino acids are encoded by multiple synonymous codons. For an amino acid, some of its synonymous codons are used much more rarely than others. Analyses of positions of such rare codons in protein sequences revealed that rare codons can…
Across all kingdoms of biological life, protein-coding genes exhibit unequal usage of synonmous codons. Although alternative theories abound, translational selection has been accepted as an important mechanism that shapes the patterns of…
A codon table is a useful tool for mapping codons to amino acids as they have been assigned by nature. It has become a scientific icon because of the way it embodies our understanding of this natural process and the way it immediately…
We examine dynamic structure factors of spin-1/2 chains with nearest-neighbor interactions of XX and Dzyaloshinskii-Moriya type, and with periodic and random changes in the sign of these interactions. This special kind of inhomogeneity can…
Many cases of non-standard genetic codes are known in mitochondrial genomes. We carry out analysis of phylogeny and codon usage of organisms for which the complete mitochondrial genome is available, and we determine the most likely…
Recently discovered advanced materials, such as heavy fermions, frequently exhibit a rich phase diagram suggesting the presence of different competing interactions. A unified description of the origin of these multiple interactions, albeit…
We examine the emergence and suppression of signatures of quantum Darwinism when the system of interest interacts with a complex, structured environment. We introduce an extended spin-star model where the system is coupled to $N$…
A representation of the genetic code as a six-dimensional Boolean hypercube is proposed. It is assumed here that this structure is the result of the hierarchical order of the interaction energies of the bases in codon-anticodon recognition.…
The Kondo-lattice model describes a typical spin-charge coupled system in which localized spins and itinerant electrons are strongly coupled via exchange interactions and exhibits a variety of long-wavelength magnetic orders originating…
We study the statistical behavior of two out of equilibrium systems. The first one is a quasi one-dimensional gas with two species of particles under the action of an external field which drives each species in opposite directions. The…
Spin-orbit coupling (SOC) is pivotal for various fundamental spin-dependent phenomena in solids and their technological applications. In semiconductors, these phenomena have been so far studied in relatively weak electron-electron…
We study the effects of the Coulomb interaction in the one dimensional Kondo lattice model on the phase diagram, the static magnetic susceptibility and electron spin relaxation. We show that onsite Coulomb interaction supports ferromagnetic…
In special coordinates (codon position--specific nucleotide frequencies) bacterial genomes form two straight lines in 9-dimensional space: one line for eubacterial genomes, another for archaeal genomes. All the 348 distinct bacterial…
Spin-orbit coupling is a single-particle phenomenon known to generate topological order, and electron-electron interactions cause ordered many-body phases to exist. The rich interplay of these two mechanisms is present in a broad range of…
We review and extend some recent investigations of the effects of aperiodic interactions on the critical behavior of ferromagnetic $q$-state Potts models. By considering suitable diamond or necklace hierarchical lattices, and assuming a…
Spin crossover frameworks and molecular crystals display fascinating collective behaviours. This includes multi-step transitions with hysteresis and a wide variety of long-range ordered patterns of high-spin and low-spin metal centres. From…
We consider a semi-classical model to describe the origin of the spin-orbit interaction in a simple system such as the hydrogen atom. The interaction energy U is calculated in the rest-frame of the nucleus, around which an electron, having…
Assemblies of interacting quantum particles often surprise us with properties that are difficult to predict. One of the simplest quantum many-body systems is the spin 1/2 Heisenberg antiferromagnetic chain, a linear array of interacting…
A spin-1 Blume-Capel model with dilute and random crystal fields is examined for honeycomb and square lattices by introducing an effective-field approximation that takes into account the correlations between different spins that emerge when…
Characterizing the frequency-dependent response of amorphous systems and glasses can provide important insights into their physics. Here, we study the response of an electron glass, where Coulomb interactions are important and have…