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In this paper, we study the significance of ecological interactions and separation of birth and death dynamics in stochastic heterogeneous populations via general birth-death processes. Interactions can manifest through the birth dynamics,…

种群与进化 · 定量生物学 2025-07-03 Erin Beckman , Heyrim Cho , Linh Huynh

We study mathematical models describing the evolution of stochastic age-structured populations. After reviewing existing approaches, we present a full kinetic framework for age-structured interacting populations undergoing birth, death and…

概率论 · 数学 2016-06-22 Tom Chou , Chris D Greenman

The aim of this paper is to study the asymptotic behavior of a system of birth and death processes in mean field type interaction in discrete space. We first establish the exponential convergence of the particle system to equilibrium for a…

概率论 · 数学 2015-10-13 Marie-Noémie Thai

The aim of this paper is to study the large population limit of a binary branching particle system with Moran type interactions: we introduce a new model where particles evolve, reproduce and die independently and, with a probability that…

概率论 · 数学 2024-04-12 Alexander M. G. Cox , Emma Horton , Denis Villemonais

Stochastic models that incorporate birth, death and immigration (also called birth-death and innovation models) are ubiquitous and applicable to many research topics such as quantifying species sizes in ecological populations, describing…

种群与进化 · 定量生物学 2026-05-12 Renaud Dessalles , Maria D'Orsogna , Tom Chou

The birth/death process with mutation describes the evolution of a population, and displays rich dynamics including clustering and fluctuations. We discuss an analytical `field-theoretical' approach to the birth/death process, using a…

种群与进化 · 定量生物学 2007-11-20 Daniel John Lawson , Henrik Jeldtoft Jensen

A phylogenetic birth-and-death model is a probabilistic graphical model for a so-called phylogenetic profile, i.e., the size distribution for a homolog gene family at the terminal nodes of a phylogeny. Profile datasets are used in…

种群与进化 · 定量生物学 2009-02-06 Miklós Csűrös , István Miklós

Understanding how stochastic and non-linear deterministic processes interact is a major challenge in population dynamics theory. After a short review, we introduce a stochastic individual-centered particle model to describe the evolution in…

概率论 · 数学 2009-06-29 Regis Ferriere , Viet Chi Tran

We present an analysis of the classical contact process on scale-free networks. A mean-field study, both for finite and infinite network sizes, yields an absorbing-state phase transition at a finite critical value of the control parameter,…

统计力学 · 物理学 2009-11-11 Claudio Castellano , Romualdo Pastor-Satorras

The parameters of many classes of birth-death processes cannot be inferred uniquely from phylogenetic trees: infinitely many parameter combinations yield the same distribution of phylogenetic trees. Here, we show that parameter…

种群与进化 · 定量生物学 2026-04-21 Tobias Dieselhorst , Tanja Stadler

In this paper we introduce and discuss kinetic equations for the evolution of the probability distribution of the number of particles in a population subject to binary interactions. The microscopic binary law of interaction is assumed to be…

概率论 · 数学 2015-01-13 Federico Bassetti , Giuseppe Toscani

We study the interface of the multitype contact process on $\mathbb{Z}$. In this process, each site of $\mathbb{Z}$ is either empty or occupied by an individual of one of two species. Each individual dies with rate 1 and attempts to give…

概率论 · 数学 2015-09-16 Thomas Mountford , Daniel Valesin

We study the dynamics of a spin-flip model with a mean field interaction. The system is non reversible, spacially inhomogeneous, and it is designed to model social interactions. We obtain the limiting behavior of the empirical averages in…

概率论 · 数学 2015-05-14 Francesca Collet , Paolo Dai Pra , Elena Sartori

Genetic data are often used to infer demographic history and changes or detect genes under selection. Inferential methods are commonly based on models making various strong assumptions: demography and population structures are supposed…

种群与进化 · 定量生物学 2020-07-28 Clotilde Lepers , Sylvain Billiard , Matthieu Porte , Sylvie Méléard , Viet Chi Tran

By introducing the notions of living and dead nodes a new model of random tree evolution with continuous time parameter has been constructed. It is assumed that two random variables, the lifetime and the offspring number of living nodes…

统计力学 · 物理学 2007-05-23 L. Pal

A birth-death-sampling model gives rise to phylogenetic trees with samples from the past and the present. Interpreting "birth" as branching speciation, "death" as extinction, and "sampling" as fossil preservation and recovery, this model --…

种群与进化 · 定量生物学 2018-03-12 Tanja Stadler , Alexandra Gavryushkina , Rachel C. M. Warnock , Alexei J. Drummond , Tracy A. Heath

Independent sample generation is the prevailing paradigm in modern diffusion-based generative models of AI. We ask a different question: can samples \emph{coordinate} through shared population statistics to transport probability mass more…

最优化与控制 · 数学 2026-05-04 Michael Chertkov

We are interested in the evolving genealogy of a birth and death process with trait structure and ecological interactions. Traits are hereditarily transmitted from a parent to its offspring unless a mutation occurs. The dynamics may depend…

概率论 · 数学 2012-06-20 Sylvie Méléard , Viet Chi Tran

We study a version of the Tangled Nature model of evolutionary ecology redefined in a phenotype space where mutants have properties correlated to their parents. The model has individual-based dynamics whilst incorporating species scale…

种群与进化 · 定量生物学 2016-09-08 Simon Laird , Henrik Jeldtoft Jensen

We are interested in modelling Darwinian evolution, resulting from the interplay of phenotypic variation and natural selection through ecological interactions. Our models are rooted in the microscopic, stochastic description of a population…

概率论 · 数学 2016-08-16 Nicolas Champagnat , Régis Ferrière , Sylvie Méléard
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