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This article characterizes certain small multistationary chemical reaction networks. We consider the set of fully open networks, those for which all chemical species participate in inflow and outflow, containing one non-flow (reversible or…

动力系统 · 数学 2013-01-18 Badal Joshi

We establish that mass conserving single terminal-linkage networks of chemical reactions admit positive steady states regardless of network deficiency and the choice of reaction rate constants. This result holds for closed systems without…

分子网络 · 定量生物学 2015-03-19 Santiago Akle , Onkar Dalal , Ronan M. T. Fleming , Michael Saunders , Nicole Taheri , Yinyu Ye

We study the one dimensional three species monomer-monomer reaction model in the reaction controlled limit using mean-field theory and dynamic Monte Carlo simulations. The phase diagram consists of a reactive steady state bordered by three…

统计力学 · 物理学 2009-10-31 Kevin E. Bassler , Dana A. Browne

With the increasing complexity of time-delayed systems, the diversification of boundary types of chemical reaction systems poses a challenge for persistence analysis. This paper focuses on delayed complex balanced mass action systems…

动力系统 · 数学 2023-03-29 Xiaoyu Zhang , Chuanhou Gao , Denis Dochain

In this paper, we carry out a global qualitative analysis of a reduced planar quartic Topp system which models the dynamics of diabetes. In particular, studying global bifurcations, we prove that such a system can have at most two limit…

定量方法 · 定量生物学 2019-04-11 Valery A. Gaiko

We propose a general mechanism for generating limit cycle (LC) oscillations by coupling a linear bosonic mode to a dissipative nonlinear bosonic mode. By analyzing the stability matrix, we show that LCs arise due to a supercritical Hopf…

We consider a stochastic queueing system modelling the behaviour of a wireless network with nodes employing a discrete-time version of the standard decentralised medium access algorithm. The system is {\em unsaturated} -- each node receives…

网络与互联网体系结构 · 计算机科学 2018-03-21 Seva Shneer , Alexander Stolyar

We demonstrate that a potential coexists with limit cycle. Here the potential determines the final distribution of population. Our demonstration consists of three steps: We first show the existence of limit from a typical physical sciences…

混沌动力学 · 物理学 2007-05-23 X. -M. Zhu , L. Yin , P. Ao

We show that there are two classes of finite size effects for dynamic models taking place on a scale-free topology. Some models in finite networks show a behavior that depends only on the system size N. Others present an additional distinct…

统计力学 · 物理学 2008-04-21 Claudio Castellano , Romualdo Pastor-Satorras

Peng et al.(2020) formulated one-way fluxes for a general chemical reaction far from equilibrium, with arbitrary complex mechanisms, multiple intermediates, and internal kinetic cycles. Species are classified into internal Y's and external…

概率论 · 数学 2021-11-16 Yong Chen , Wu-Jun Gao , Lu-Yao Qiao , Ying Sheng

We give a general existence result for interacting particle systems with local interactions and bounded jump rates but noncompact state space at each site. We allow for jump events at a site that affect the state of its neighbours. We give…

概率论 · 数学 2008-04-04 Mathew D. Penrose

We study the steady state of a stochastic particle system on a two-dimensional lattice, with particle influx, diffusion and desorption, and the formation of a dimer when particles meet. Surface processes are thermally activated, with…

统计力学 · 物理学 2015-05-30 A. Wolff , I. Lohmar , J. Krug , O. Biham

We consider a natural class of reaction networks which consist of reactions where either two species can inactivate each other (i.e., sequestration), or some species can be transformed into another (i.e., transmutation), in a way that gives…

动力系统 · 数学 2022-04-12 Gheorghe Craciun , Badal Joshi , Casian Pantea , Ike Tan

We study properties of !-limit sets of multivalued semiflows like chain recurrence or the existence of cyclic chains. First, we prove that under certain conditions the omega-limit set of a trajectory is chain recurrent, applying this result…

动力系统 · 数学 2025-01-10 Oleksiy V. Kapustyan , Pavlo O. Kasyanov , José Valero

To model bio-chemical reaction systems with diffusion one can either use stochastic, microscopic reaction-diffusion master equations or deterministic, macroscopic reaction-diffusion system. The connection between these two models is not…

偏微分方程分析 · 数学 2023-06-21 Malcolm Egan , Bao Quoc Tang

In view of recent microrheology experiments we re-examine the problem of a rigid sphere oscillating inside a dilute polymer network. The network and its solvent are treated using the two-fluid model. We show that the dynamics of the medium…

软凝聚态物质 · 物理学 2015-05-15 Haim Diamant

We present a systematic mathematical analysis of the qualitative steady-state response to rate perturbations in large classes of reaction networks. This includes multimolecular reactions and allows for catalysis, enzymatic reactions,…

动力系统 · 数学 2017-11-22 Bernhard Brehm , Bernold Fiedler

This paper investigates the multiplicity and the number of limit cycles for planar piecewise linear system divided into two regions by a straight line and each linear subsystem has a node. Through constructing Poincare half maps and a…

动力系统 · 数学 2025-06-10 Lu Chen , Changjian Liu

We present a stochastic, time-discrete boolean model which mimics the mesoscopic dynamics of the desorption reactions $A+A\to A+S$ and $A+A\to S+S$ in a 1D lattice. In the continuous-time limit, we derive a hierarchy of dynamical equations…

统计力学 · 物理学 2009-11-07 E. Abad , P. Grosfils , G. Nicolis

We develop a cross-border market model for two countries based on a continuous trading mechanism, in which the transmission capacities that enable transactions between market participants from different countries are limited. Our market…

概率论 · 数学 2024-11-26 Cassandra Milbradt , Dörte Kreher