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A model of $s$ interacting species is considered with two types of dynamical variables. The fast variables are the populations of the species and slow variables the links of a directed graph that defines the catalytic interactions among…

adap-org · 物理学 2009-10-30 Sanjay Jain , Sandeep Krishna

In species reproducing both sexually and asexually clones are often more common in recently established populations. Earlier studies have suggested that this pattern arises from natural selection favouring asexual recruitment in young…

Mutualistic interactions, which are beneficial for both interacting species, are recurrently present in ecosystems. Observations of natural systems showed that, if we draw mutualistic relationships as binary links between species, the…

物理与社会 · 物理学 2019-08-21 Clàudia Payrató Borrás , Laura Hernández , Yamir Moreno

When three species compete cyclically in a well-mixed, stochastic system of $N$ individuals, extinction is known to typically occur at times scaling as the system size $N$. This happens, for example, in rock-paper-scissors games or…

物理与社会 · 物理学 2019-02-20 Kevin E. Bassler , Erwin Frey , R. K. P. Zia

Reaction networks are mathematical models of interacting chemical species that are primarily used in biochemistry. There are two modeling regimes that are typically used, one of which is deterministic and one that is stochastic. In…

分子网络 · 定量生物学 2018-09-14 David Anderson , Daniele Cappelletti

We study a stochastic community model able to interpolate from a neutral regime to a niche partitioned regime upon varying a single parameter tuning the intensity of niche stabilization, namely the difference between intraspecific and…

种群与进化 · 定量生物学 2013-09-17 Simone Pigolotti , Massimo Cencini

Over the past century, nonlinear difference and differential equations have been used to understand conditions for species coexistence. However, these models fail to account for random fluctuations due to demographic and environmental…

种群与进化 · 定量生物学 2019-02-12 Sebastian J. Schreiber

Finding the most powerful node in a dynamic random network, the largest set in a partition-valued stochastic process, or the largest family in an evolving population at a given time, can be a very difficult problem. This is particularly the…

概率论 · 数学 2020-09-09 Cécile Mailler , Peter Mörters , Anna Senkevich

We use the optimal foraging theory to study coexistence between two plant species and a generalist pollinator. We compare conditions for plant coexistence for non-adaptive vs. adaptive pollinators that adjust their foraging strategy to…

种群与进化 · 定量生物学 2016-08-22 Tomás A. Revilla , Vlastimil Křivan

We consider weakly interacting jump processes on time-varying random graphs with dynamically changing multi-color edges. The system consists of a large number of nodes in which the node dynamics depends on the joint empirical distribution…

概率论 · 数学 2021-07-19 Erhan Bayraktar , Ruoyu Wu

Frequency dependent selection and demographic fluctuations play important roles in evolutionary and ecological processes. Under frequency dependent selection, the average fitness of the population may increase or decrease based on…

种群与进化 · 定量生物学 2015-06-23 Weini Huang , Christoph Hauert , Arne Traulsen

We propose a model based on coupled multiplicative stochastic processes to understand the dynamics of competing species in an ecosystem. This process can be conveniently described by a Fokker-Planck equation. We provide an analytical…

种群与进化 · 定量生物学 2012-03-13 Simone Pigolotti , Alessandro Flammini , Amos Maritan

Density dependence is important in the ecology and evolution of microbial and cancer cells. Typically, we can only measure net growth rates, but the underlying density-dependent mechanisms that give rise to the observed dynamics can…

种群与进化 · 定量生物学 2025-06-04 Linh Huynh , Jacob G. Scott , Peter J. Thomas

We consider an evolving network of a fixed number of nodes. The allocation of edges is a dynamical stochastic process inspired by biological reproduction dynamics, namely by deleting and duplicating existing nodes and their edges. The…

统计力学 · 物理学 2007-09-14 Henrik Jeldtot Jensen

In complex systems, the interplay between nonlinear and stochastic dynamics, e.g., J. Monod's necessity and chance, gives rise to an evolutionary process in Darwinian sense, in terms of discrete jumps among attractors, with punctuated…

适应与自组织系统 · 物理学 2013-03-18 Hong Qian

Stochastic gene regulatory networks with bursting dynamics can be modeled mesocopically as a generalized density-dependent Markov chain (GDDMC) or macroscopically as a piecewise-deterministic Markov process (PDMP). Here we prove a limit…

概率论 · 数学 2019-09-04 Xian Chen , Chen Jia

In this paper we consider an interacting particle system in $\mathbb{R}^d$ modelled as a system of $N$ stochastic differential equations driven by L\'evy processes. The limiting behaviour as the size $N$ grows to infinity is achieved as a…

概率论 · 数学 2019-09-12 Christian Olivera , Marielle Simon

We study a model ecosystem by means of dynamical techniques from disordered systems theory. The model describes a set of species subject to competitive interactions through a background of resources, which they feed upon. Additionally…

种群与进化 · 定量生物学 2009-11-13 Yoshimi Yoshino , Tobias Galla , Kei Tokita

We study in this paper the longtime behavior of some large but finite populations of interacting stochastic differential equations whose (infinite population) limit Fokker-Planck PDE admits a stable periodic solution. We show that the…

概率论 · 数学 2021-07-07 Eric Luçon , Christophe Poquet

We study an individual-based stochastic spatial epidemic model where the number of locations and the number of individuals at each location both grow to infinity. Each individual is associated with a random infection-age dependent…

概率论 · 数学 2025-10-21 Guodong Pang , Etienne Pardoux
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