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An essential feature of the adaptive immune system is the proliferation of antigen-specific lymphocytes during an immune reaction to form a large pool of effector cells. This proliferation must be regulated to ensure an effective response…

种群与进化 · 定量生物学 2021-01-06 Andreas Mayer , Yaojun Zhang , Alan S. Perelson , Ned S. Wingreen

The evolution of the adaptive immune system is characterized by changes in the relative abundances of the B- and T-cell clones that make up its repertoires. To fully capture this evolution, we need to describe the complex dynamics of the…

种群与进化 · 定量生物学 2017-03-02 Jonathan Desponds , Andreas Mayer , Thierry Mora , Aleksandra M. Walczak

The adaptive immune system of vertebrates can detect, respond to, and memorize diverse pathogens from past experience. While the clonal selection of T helper (Th) cells is the simple and established mechanism to better recognize new…

种群与进化 · 定量生物学 2021-03-17 Takuya Kato , Tetsuya J. Kobayashi

The adaptive immune system responds to pathogens by selecting clones of cells with specific receptors. While clonal selection in response to particular antigens has been studied in detail, it is unknown how a lifetime of exposures to many…

种群与进化 · 定量生物学 2021-01-06 Mario U. Gaimann , Maximilian Nguyen , Jonathan Desponds , Andreas Mayer

Cytotoxic T lymphocytes eliminate infected or malignant cells, safeguarding surrounding tissues. Although experimental and systems-immunology studies have cataloged many molecular and cellular actors involved in an immune response, the…

生物物理 · 物理学 2026-03-04 Obinna A. Ukogu , Zachary Montague , Grégoire Altan-Bonnet , Armita Nourmohammad

The adaptive immune system relies on the diversity of receptors expressed on the surface of B and T-cells to protect the organism from a vast amount of pathogenic threats. The proliferation and degradation dynamics of different cell types…

种群与进化 · 定量生物学 2016-02-10 Jonathan Desponds , Thierry Mora , Aleksandra M. Walczak

The adaptive immune system responds to foreign invaders by activating T cells. However, this response is perilous if T cells are activated by the wrong signal or if they remain activated unduly long after the threat has been eliminated. It…

种群与进化 · 定量生物学 2017-12-04 Gershom Buri , Girma Mesfin Zelleke , Wilfred Ndifon

T cells are central to the adaptive immune response, capable of detecting pathogenic antigens while ignoring healthy tissues with remarkable specificity and sensitivity. Quantitatively understanding how T cell receptors (TCRs) discriminate…

分子网络 · 定量生物学 2025-11-25 François X. P. Bourassa , Sooraj Achar , Grégoire Altan-Bonnet , Paul François

A major contribution to the onset and development of autoimmune disease is known to come from infections. An important practical problem is identifying the precise mechanism by which the breakdown of immune tolerance as a result of immune…

定量方法 · 定量生物学 2018-05-21 F. Fatehi Chenar , Y. N. Kyrychko , K. B. Blyuss

We study the Langevin dynamics of the adaptive immune system, modelled by a lymphocyte network in which the B cells are interacting with the T cells and antigen. We assume that B clones and T clones are evolving in different thermal noise…

无序系统与神经网络 · 物理学 2017-01-04 Alexander Mozeika , Anthony CC Coolen

Following antigen stimulation, the net outcomes of a T cell response are shaped by integrated signals from both positive co-stimulatory and negative regulatory molecules. Recently, the blockade of negative regulatory molecules (i.e. immune…

细胞行为 · 定量生物学 2017-09-19 Haidong Dong , Yiyi Yan , Roxana S. Dronca , Svetomir N. Markovic

Regulatory T cells (Treg) have recently been identified as playing a central role in allergy and during allergen-specific immunotherapy. We have extended our previous mathematical model describing the nonlinear dynamics of Th1-Th2…

细胞行为 · 定量生物学 2010-03-05 Fridolin Gross , Gerhard Metzner , Ulrich Behn

The human adaptive immune response is known to weaken in advanced age, resulting in increased severity of pathogen-born illness, poor vaccine efficacy, and a higher prevalence of cancer in the elderly. Age-related erosion of the T-cell…

种群与进化 · 定量生物学 2019-01-03 Stephanie M. Lewkiewicz , Yao-Li Chuang , Tom Chou

The mechanisms underlying the formation of post-infection sequelae are complex and remain controversial. This hypothesis integrates Bystryn's antibody feedback phenomenon and Imbiakha's immune cost theory, proposing for the first time a…

定量方法 · 定量生物学 2025-06-10 Shi Qiru

Clonal structure of the human peripheral T-cell repertoire is shaped by a number of homeostatic mechanisms, including antigen presentation, cytokine and cell regulation. Its accurate tuning leads to a remarkable ability to combat pathogens…

定量方法 · 定量生物学 2014-10-07 O. V. Bolkhovskaya , D. Yu. Zorin , M. V. Ivanchenko

In previous work, we studied host response to a pathogen which uses a cycle of immunologically distinct stages to establish and maintain infection. We showed that for generic parameter values, the system has a unique biologically meaningful…

种群与进化 · 定量生物学 2012-05-28 Michael Shapiro , Edgar Delgado-Eckert

The set of T cells that express the same T cell receptor (TCR) sequence represents a T cell clone. The number of different naive T cell clones in an organism reflects the number of different T cell receptors (TCRs) arising from…

种群与进化 · 定量生物学 2020-03-06 Renaud Dessalles , Yunbei Pan , Mingtao Xia , Davide Maestrini , Maria R. D'Orsogna , Tom Chou

Chimeric antigen receptor (CAR) T cell therapy has shown remarkable success in hematological malignancies, yet patient responses remain highly variable and the roles of CD4+ and CD8+ subsets are not fully understood. We present an extended…

定量方法 · 定量生物学 2026-03-11 Saranya Varakunan , Melissa Stadt , Mohammad Kohandel

The vertebrate immune system is a wonder of modern evolution. Occasionally, however, correlations within the immune system lead to inappropriate recruitment of preexisting T cells against novel viral diseases. We present a random energy…

生物大分子 · 定量生物学 2009-11-10 Jeong-Man Park , Michael W. Deem

Complete understanding of the mechanisms regulating the proliferation and differentiation that takes place during human immune CD8+ T cell responses is still lacking. Human clinical data is usually limited to blood cell counts, yet the…

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