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Natural phenomena frequently involve a very large number of interacting molecules moving in confined regions of space. Cellular transport by motor proteins is an example of such collective behavior. We derive a deterministic compartmental…

亚细胞过程 · 定量生物学 2017-11-01 Yoram Zarai , Michael Margaliot , Anatoly B. Kolomeisky

We address the dynamics of interacting particles on a disordered lattice formed by a random comb. The dynamics comprises that of the asymmetric simple exclusion process, whereby motion to nearest-neighour sites that are empty is more likely…

统计力学 · 物理学 2025-06-03 Mrinal Sarkar , Shamik Gupta

Asymmetric exclusion processes for particles moving on parallel channels with inhomogeneous coupling are investigated theoretically. Particles interact with hard-core exclusion and move in the same direction on both lattices, while…

统计力学 · 物理学 2009-11-13 K. Tsekouras , A. B. Kolomeisky

Motor proteins are active enzymatic molecules that drive a variety of biological processes, including transfer of genetic information, cellular transport, cell motility and muscles contraction. It is known that these biological molecular…

软凝聚态物质 · 物理学 2018-01-17 Luiza V. F. Gomes , Anatoly B. Kolomeisky

Intracellular transport processes driven by molecular motors can be described by stochastic lattice models of self-driven particles. Here we focus on bidirectional transport models excluding the exchange of particles on the same track. We…

生物物理 · 物理学 2015-05-27 M. Ebbinghaus , C. Appert-Rolland , L. Santen

To mimic the complex transport-like collective phenomena in a man-made or natural system, we study an open network junction model of totally asymmetric simple exclusion process with bulk particle attachment and detachment. The stationary…

统计力学 · 物理学 2022-02-23 Ankita Gupta , Arvind Kumar Gupta

Motor proteins are key players in intracellular transport processes and biological motion. Theoretical modeling of these systems has been achieved by the use of step processes on one-dimensional lattices. After a comprehensive introduction…

统计力学 · 物理学 2007-05-23 Hauke Hinsch , Roger Kouyos , Erwin Frey

The flow of motor proteins on a filamental track is modelled within the the framework of lattice driven diffusive systems. Motors, considered as hopping particles, perform a highly biased asymmetric exclusion process when bound to the…

统计力学 · 物理学 2007-05-23 M. Ebrahim Fouladvand , Modjtaba Salehi , Mostafa Yadegari

Biological transport is supported by collective dynamics of enzymatic molecules that are called motor proteins or molecular motors. Experiments suggest that motor proteins interact locally via short-range potentials. We investigate the…

统计力学 · 物理学 2015-06-18 Hamid Teimouri , Anatoly B. Kolomeisky , Kareem Mehrabiani

We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…

统计力学 · 物理学 2019-06-26 Yvan Rousset , Luca Ciandrini , Norbert Kern

A two-lane exclusion process is studied where particles move in the two lanes in opposite directions and are able to change lanes. The focus is on the steady state behavior in situations where a positive current is constrained to an…

统计力学 · 物理学 2015-05-14 Róbert Juhász

We present a study of exclusion processes on networks as models for complex transport phenomena and in particular for active transport of motor proteins along the cytoskeleton. We argue that active transport processes on networks…

统计力学 · 物理学 2013-08-12 I. Neri , N. Kern , A. Parmeggiani

We introduce a multi-species lattice gas model for motor protein driven collective cargo transport on cellular filaments. We use this model to describe and analyze the collective motion of interacting vesicle cargoes being carried by…

统计力学 · 物理学 2010-09-10 Sudipto Muhuri , Ignacio Pagonabarraga

Totally asymmetric simple exclusion processes (TASEP) with particles which occupy more than one lattice site and with a local inhomogeneity far away from the boundaries are investigated. These non-equilibrium processes are relevant for the…

统计力学 · 物理学 2009-11-10 Leah B. Shaw , Anatoly B. Kolomeisky , Kelvin H. Lee

Driven non-equilibrium lattice models have wide-ranging applications in contexts such as mass transport, traffic flow, and transport in biological systems. In this work, we investigate the steady-state properties of a one-dimensional…

统计力学 · 物理学 2026-01-16 Swastik Majumder , Mustansir Barma

We study long-range interacting systems driven by external stochastic forces that act collectively on all the particles constituting the system. Such a scenario is frequently encountered in the context of plasmas, self-gravitating systems,…

统计力学 · 物理学 2013-12-03 Cesare Nardini , Shamik Gupta , Stefano Ruffo , Thierry Dauxois , Freddy Bouchet

We study a persistent exclusion process with time-periodic external potential on a 1d periodic lattice through numerical simulations. A set of run-and-tumble particles move on a lattice of length $L$ and tumbling probability $\gamma \ll 1$…

统计力学 · 物理学 2025-03-26 Deepsikha Das , Sakuntala Chatterjee

A class of exclusion processes in which particles perform history-dependent random walks is introduced, stimulated by dynamic phenomena in some biological and artificial systems. The particles locally interact with the underlying substrate…

生物物理 · 物理学 2011-08-15 Johannes H. P. Schulz , Anatoly B. Kolomeisky , Erwin Frey

Understanding the organization of collective motion in biological systems is an ongoing challenge. In this Paper we consider a minimal model of self-propelled particles with variable speed. Inspired by experimental data from schooling fish,…

生物物理 · 物理学 2015-06-04 Shradha Mishra , Kolbjørn Tunstrøm , Iain D. Couzin , Cristián Huepe

We study finite particle systems on the one-dimensional integer lattice, where each particle performs a continuous-time nearest-neighbour random walk, with jump rates intrinsic to each particle, subject to an exclusion interaction which…

概率论 · 数学 2024-05-07 Vadim Malyshev , Mikhail Menshikov , Serguei Popov , Andrew Wade
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