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The MB-pol many-body potential has recently emerged as an accurate molecular model for water simulations from the gas to the condensed phase. In this study, the accuracy of MB-pol is systematically assessed across the three phases of water…

The microscopic behavior of water under different conditions and in different environments remains the subject of intense debate. A great number of the controversies arise due to the contradictory predictions obtained within different…

化学物理 · 物理学 2012-10-29 Gregory R. Medders , Volodymyr Babin , Francesco Paesani

$\Delta$-Machine Learning ($\Delta$-ML) has been shown to effectively and efficiently bring a low-level ML potential energy surface to CCSD(T) quality. Here we propose extending this approach to general force fields, which implicitly or…

化学物理 · 物理学 2024-07-30 Chen Qu , Qi Yu , Riccardo Conte , Paul L. Houston , Apurba Nandi , Joel M. Bowman

Among the many existing molecular models of water, the MB-pol many-body potential has emerged as a remarkably accurate model, capable of reproducing thermodynamic, structural, and dynamic properties across water's solid, liquid, and vapor…

Multistate empirical valence bond (EVB) models provide an accurate description of the energetics of proton transfer and solvation in complex molecular systems and can be efficiently used in molecular dynamics computer simulations. Within…

软凝聚态物质 · 物理学 2007-11-06 Jürgen Köfinger , Christoph Dellago

Water's unique hydrogen-bonding network and anomalous properties pose significant challenges for accurately modeling its structural, thermodynamic, and transport behavior across varied conditions. Although machine-learned potentials have…

化学物理 · 物理学 2025-08-29 Ke Xu , Ting Liang , Nan Xu , Penghua Ying , Shunda Chen , Ning Wei , Jianbin Xu , Zheyong Fan

Microscopic stress fields are widely used in molecular simulations to understand mechanical behavior. Recently, decomposition methods of multibody forces to central force pairs between the interacting particles have been proposed. Here, we…

软凝聚态物质 · 物理学 2016-11-23 Koh M. Nakagawa , Hiroshi Noguchi

Although a great number of computational models of water are available today, the majority of current biological simulations are done with simple models, such as TIP3P and SPC, developed almost thirty years ago and only slightly modified…

化学物理 · 物理学 2015-05-07 Igor Leontyev , Alexei Stuchebrukhov

Standard forms of density-functional theory (DFT) have good predictive power for many materials, but are not yet fully satisfactory for solid, liquid and cluster forms of water. We use a many-body separation of the total energy into its…

材料科学 · 物理学 2013-03-05 M. J. Gillan , D. Alfè , A. P. Bartók , G. Csányi

Distributed point charge models (DCM) and their minimal variants (MDCM) have been integrated with tools widely used for condensed-phase simulations, including a virial-based barostat and a slow-growth algorithm for thermodynamic…

化学物理 · 物理学 2020-11-03 Mike Devereux , Marco Pezzella , Shampa Raghunathan , Markus Meuwly

The issues of electronic polarizability in molecular dynamics simulations are discussed. We argue that the charges of ionized groups in proteins, and charges of ions in conventional non-polarizable force fields such as CHARMM, AMBER,…

化学物理 · 物理学 2017-09-13 Igor Leontyev , Alexei Stuchebrukhov

Parametrizing energy functions for ionic systems can be challenging. Here, the total energy function for an eutectic system consisting of water, SCN$^-$, K$^+$ and acetamide is improved vis-a-vis experimentally measured properties. Given…

化学物理 · 物理学 2024-10-25 Kai Töpfer , Eric Boittier , Michael Devereux , Andrea Pasti , Peter Hamm , Markus Meuwly

Water is perhaps the most simulated liquid. Recently three water models have been developed following the adaptive force matching (AFM) method that provides excellent predictions of water properties with only electronic structure…

化学物理 · 物理学 2015-12-02 Hongyi Hu , Zhonghua Ma , Feng Wang

We present a new polarizable force field for aqueous ions (Li+, Na+, K+, Rb+, Cs+, Mg2+, Ca2+, Sr2+ and Cl-) derived from condensed phase ab-initio calculations. We use Maximally Localized Wannier Functions together with a generalized force…

The concept of molecular mechanics force field has been widely accepted nowadays for studying various processes in biomolecular systems. In this paper, we suggest a modification for the standard CHARMM force field that permits simulations…

This work constructs an advanced force field, the Completely Multipolar Model (CMM), to quantitatively reproduce each term of an energy decomposition analysis (EDA) for aqueous solvated alkali metal cations and halide anions and their ion…

化学物理 · 物理学 2024-10-14 J. P. Heindel , L. Kim , M. Head-Gordon , T. Head-Gordon

In this work, a force field for several ions in water is proposed. In particular, we consider the cations Li$^+$ , Na$^+$ , K$^+$, Mg$^{2+}$, Ca$^{2+}$ and the anions Cl$^-$, and SO$_4^{2-}$ . These ions were selected as they appear in the…

化学物理 · 物理学 2024-01-25 I. M. Zeron , J. L. F. Abascal , C. Vega

The accurate representation of multidimensional potential energy surfaces is a necessary requirement for realistic computer simulations of molecular systems. The continued increase in computer power accompanied by advances in correlated…

We address the degree to which machine learning can be used to accurately and transferably predict post-Hartree-Fock correlation energies. Refined strategies for feature design and selection are presented, and the molecular-orbital-based…

化学物理 · 物理学 2019-04-17 Lixue Cheng , Matthew Welborn , Anders S. Christensen , Thomas F. Miller

The behavior of liquid water under an electric field is a crucial phenomenon in science and engineering. However, its detailed description at a microscopic level is difficult to achieve experimentally. Here we report on the first ab initio…

软凝聚态物质 · 物理学 2012-05-16 A. Marco Saitta , Franz Saija , Paolo V. Giaquinta
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