相关论文: Recent advances on the non-coherent band surgery m…
We study decoherence processes of an S = 1/2 localized spin coupled to conduction band electrons in a metal or a semiconductor via an Ising-like interaction. We derive master equations for the density matrix of the localized spin, by…
We introduce a new combinatorial method to encode knots and links with applications to knot invariants. Clasp diagrams defined in this paper are combinatorial blueprints for building knot diagrams out of full twists on two strings rather…
We give a formula for the duality structure of the 3-manifold obtained by doing zero-framed surgery along a knot in the 3-sphere, starting from a diagram of the knot. We then use this to give a combinatorial algorithm for computing the…
We extend the equality-type results of Ito--Takimura and Kindred for the non-orientable genera of alternating knots to the setting of two-component alternating links. We show that, for such links, a unified quantity capturing both…
The primary structure of proteins, that is their sequence, represents one of the most abundant set of experimental data concerning biomolecules. The study of correlations in families of co--evolving proteins by means of an inverse…
Recent progress in string theory has led to a reformulation of quantum-group polynomial invariants for knots and links into new polynomial invariants whose coefficients can be understood in topological terms. We describe in detail how to…
Protein-ligand complex structures have been utilised to design benchmark machine learning methods that perform important tasks related to drug design such as receptor binding site detection, small molecule docking and binding affinity…
In this paper, we study a geometric/topological measure of knots and links called the nullification number. The nullification of knots/links is believed to be biologically relevant. For example, in DNA topology, one can intuitively regard…
We equip a knot $K$ with a set of colored bonds, that is, colored intervals properly embedded into $\mathbb{R}^3 \setminus K$. Such a construction can be viewed as a structure that topologically models a closed protein chain including any…
We study the strong coupling expansion of large $N$ QCD in various dimensions, reformulating the Kogut-Susskind Hamiltonian on a square lattice in terms of (constrained) one dimensional spin chain models. We study the integrability…
The planted bisection model is a random graph model in which the nodes are divided into two equal-sized communities and then edges are added randomly in a way that depends on the community membership. We establish necessary and sufficient…
We summarize recent work on a combinatorial knot invariant called knot contact homology. We also discuss the origins of this invariant in symplectic topology, via holomorphic curves and a conormal bundle naturally associated to the knot.
It is shown that, an entire class of off-diagonally disordered linear lattices composed of two basic building blocks and described within a tight binding model can be tailored to generate absolutely continuous energy bands. It can be…
Accurate identification of protein nucleic-acid-binding residues poses a significant challenge with important implications for various biological processes and drug design. Many typical computational methods for protein analysis rely on a…
Proteins with nontrivial topology, containing knots and slipknots, have the ability to fold to their native states without any additional external forces invoked. A mechanism is suggested for folding of these proteins, such as YibK and…
In this paper, we introduce a new type of relation between knots called the descendant relation. One knot $H$ is a descendant of another knot $K$ if $H$ can be obtained from a minimal crossing diagram of $K$ by some number of crossing…
We fix a null-homologous, homotopically essential knot $J$ in a 3-manifold with PTFA fundamental group and study concordance of knots that are homotopic to $J$. We construct an infinite family of knots that are characteristic to $J$, and…
Flat bands - single-particle energy bands - in tight-binding networks have attracted attention due to the presence of macroscopic degeneracies and their extreme sensitivity to perturbations. This makes them natural candidates for emerging…
Many biological tissues feature a heterogeneous network of fibers whose tensile and bending rigidity contribute substantially to these tissues' elastic properties. Rigidity percolation has emerged as a important paradigm for relating these…
Given any oriented link diagram, two types of new knot invariants are constructed. They satisfy some generalized skein relations. The coefficients of each invariant is from a commutative ring. Homomorphisms and representations of those…