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Formation of a pseudoknot in the conserved RNA core domain in the ribonucleoprotein human telomerase is required for function. In vitro experiments show that the pseudoknot (PK) is in equilibrium with an extended hairpin (HP) structure. We…

生物大分子 · 定量生物学 2011-08-09 Natalia A. Denesyuk , D. Thirumalai

The issue of the mechanism of high-Tc superconductivity remains open. In this contribution, we propose a new scenario for the mechanism of superconductivity in cuprates based on analysis of experimental data, mainly tunneling, neutron…

强关联电子 · 物理学 2009-11-13 A. Mourachkine

We investigate the temperature-dependent deposition of nickelocene (NiCp$_2$) molecules on a single crystal Au(111) substrate, revealing distinct adsorption behaviors and structural formations. At low temperatures (4.2 K), individual…

介观与纳米尺度物理 · 物理学 2025-04-22 Divya Jyoti , Alex Fétida , Laurent Limot , Roberto Robles , Nicolás Lorente , Deung-Jang Choi

This paper studies a polymer chain in the vicinity of a linear interface separating two immiscible solvents. The polymer consists of random monomer types, while the interface carries random charges. Both the monomer types and the charges…

概率论 · 数学 2015-06-05 Frank den Hollander , Alex A. Opoku

We present a fragment-based framework for analyzing exciton couplings within the $GW$-Bethe-Salpeter Equation formalism using localized molecular orbitals, and assess how excitonic states in molecular dimers can be decomposed into local and…

化学物理 · 物理学 2025-11-24 Sarathchandra Khandavilli , Arno Förster , Lucas Visscher

We consider the folding of a self-avoiding homopolymer on a lattice, with saturating hydrogen bond interactions. Our goal is to numerically evaluate the statistical distribution of the topological genus of pseudoknotted configurations. The…

生物大分子 · 定量生物学 2009-11-11 G. Vernizzi , P. Ribeca , H. Orland , A. Zee

Building on the generalization of the exactly dimerized Majumdar-Ghosh ground state to arbitrary spin S for the Heisenberg chain with a three-site term (S_{i-1} S_i)(S_i S_{i+1}) + H.c., we use density-matrix renormalization group…

强关联电子 · 物理学 2013-04-10 Frédéric Michaud , Salvatore R. Manmana , Frédéric Mila

It is widely believed that magnetic excitations become increasingly incoherent as temperature is raised due to random collisions which limit their lifetime. This picture is based on spin-wave calculations for gapless magnets in 2 and 3…

Dimerization and subsequent aggregation of polymers and biopolymers often occur under nonequilibrium conditions. When the initial state of the polymer is not collapsed or the final folded native state, the dynamics of dimerization can…

软凝聚态物质 · 物理学 2024-11-19 Sangita Mondal , Ved Mahajan , Biman Bagchi

Dimer models are well known as prototypes for locally constrained physics. They describe systems in which every site on a lattice must be attached to one dimer. Loop models are an extension of this idea, with the constraint that two dimers…

强关联电子 · 物理学 2025-08-06 Ashland Knowles , R. Ganesh

Recent work on the mechanism of polymer crystallization has led to a proposal for the mechanism of thickness selection which differs from those proposed by the surface nucleation theory of Lauritzen and Hoffman and the entropic barrier…

凝聚态物理 · 物理学 2007-05-23 Jonathan Doye , Daan Frenkel

This paper reviews experimental phase diagrams of cuprates and pnictides to demonstrate that specific features of the superconducting phase diagrams in bothHTSC families can be understood within the framework of the proposed approach,which…

超导电性 · 物理学 2018-01-23 K. V. Mitsen , O. M. Ivanenko

Superconductivity with an ultra low Tc $\sim$ 0.5 mK was discovered recently in bismuth, a semimetal. To develop a model and scenario for Bi we begin with a cubic reference lattice, close to A7 (dimerized cubic) structure of Bi. Three…

超导电性 · 物理学 2017-05-04 G. Baskaran

Liquid mixtures composed of colloidal particles and much smaller non-adsorbing linear homopolymers can undergo a gelation transition due to polymer-mediated depletion forces. We now show that the addition of linear polymers to suspensions…

We consider a polymer, with monomer locations modeled by the trajectory of an underlying Markov chain, in the presence of a potential thatinteracts with the polymer when it visits a particular site 0. Disorder is introduced by having the…

概率论 · 数学 2007-05-23 Kenneth S. Alexander

We study the largest-angle twisted homo-bilayer (LA-THB) systems, hosting Moir\'eless quasi-crystal (QC) structure. We propose to use these materials to generate high-angular-momentum (HAM) topological superconductivities (TSCs) protected…

超导电性 · 物理学 2024-02-07 Yu-Bo Liu , Yongyou Zhang , Wei-Qiang Chen , Fan Yang

The lattice cluster theory (LCT) for semiflexible linear telechelic melts, developed in paper I, is applied to examine the influence of chain stiffness on the average degree of self-assembly and the basic thermodynamic properties of linear…

软凝聚态物质 · 物理学 2015-06-29 Wen-Sheng Xu , Karl F. Freed

Many-body interactions play a crucial role in quantum topological systems, being able to impact or alter the topological classifications of non-interacting fermion systems. In open quantum systems, where interactions with the environment…

强关联电子 · 物理学 2023-09-12 F. Pavan , A. de Candia , G. Di Bello , V. Cataudella , N. Nagaosa , C. A. Perroni , G. De Filippis

The $S=1/2$ antiferromagnetic Heisenberg chain is a paradigmatic quantum system hosting exotic excitations such as spinons and solitons, and forming random singlet state in the presence of quenched disorder. Realizing and distinguishing…

In this study, we investigate interactions of extended conformations of homodimeric peptides made of small (glycine or alanine) and large hydrophobic (valine or leucine) sidechains using all-atom molecular dynamics simulations to decipher…

生物物理 · 物理学 2015-06-17 Chitra Narayanan , Cristiano L. Dias