相关论文: Genetic-metabolic networks can be modeled as toric…

The Computational Algebraic Geometry applied in Algebraic Statistics; are beginning to exploring new branches and applications; in artificial intelligence and others areas. Currently, the development of the mathematics is very extensive and…

A family of graphs optimized as the topologies for supercomputer interconnection networks is proposed. The special needs of such network topologies, minimal diameter and mean path length, are met by special constructions of the weight…

We present a new method for solving symbolically zero--dimensional polynomial equation systems in the affine and toric case. The main feature of our method is the use of problem adapted data structures: arithmetic networks and…

The toric Hilbert scheme parametrizes all algebras isomorphic to a given semigroup algebra as a multigraded vectorspace. All components of the scheme are toric varieties, and among them, there is a fairly well understood coherent component.…

We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…

In this paper we complete the results of Sullivant and Sturmfels proving that many of the algebraic group-based models for Markov processes on trees are pseudo-toric. We also show in which cases these varieties are normal. This is done by…

Let $A$ and $B$ be abelian varieties defined over the function field $k(S)$ of a smooth algebraic variety $S/k.$ We establish criteria, in terms of restriction maps to subvarieties of $S,$ for existence of various important classes of…

It was shown recently that the constraints on the initial data for Einstein's equations may be posed as an evolutionary problem [9]. In one of the proposed two methods the constraints can be replaced by a first order symmetrizable…

Statistical models of evolution are algebraic varieties in the space of joint probability distributions on the leaf colorations of a phylogenetic tree. The phylogenetic invariants of a model are the polynomials which vanish on the variety.…

Efforts to catalogue the structure of metabolic networks have generated highly detailed, genome-scale atlases of biochemical reactions in the cell. Unfortunately, these atlases fall short of capturing the kinetic details of metabolic…

Hyperbolic geometry has emerged as a powerful tool for modeling complex, structured data, particularly where hierarchical or tree-like relationships are present. By enabling embeddings with lower distortion, hyperbolic neural networks offer…

We define phylogenetic projective toric model of a trivalent graph as a generalization of a binary symmetric model of a trivalent phylogenetic tree. Generators of the pro- jective coordinate ring of the models of graphs with one cycle are…

We develop a geometric framework to study the structure and function of complex networks. We assume that hyperbolic geometry underlies these networks, and we show that with this assumption, heterogeneous degree distributions and strong…

For an arbitrary field K, let I be an ideal in the ring K[[x,y]] expressible as a polynomial in either the pair of ideals (x, y^4) and (x,y) or the pair (x,y^3) and (x^2, y). Let G be the group of automorphisms of K[[x,y]] sending the ideal…

We introduce a new link invariant called the algebraic genus, which gives an upper bound for the topological slice genus of links. In fact, the algebraic genus is an upper bound for another version of the slice genus proposed here: the…

A toric degeneration in algebraic geometry is a process where a given projective variety is being degenerated into a toric one. Then one can obtain information about the original variety via analyzing the toric one, which is a much easier…

The classical problem of algebraic models for homotopy types is precisely stated, to our knowledge for the first time. Two different natural statements for this problem are produced, the simplest one being entirely solved by the notion of…

Let $E_1,\ldots,E_k$ be a collection of linear series on an algebraic variety $X$ over $\mathbb{C}$. That is, $E_i\subset H^0(X, \mathcal{L}_i)$ is a finite dimensional subspace of the space of regular sections of line bundles $…

In combinatorial commutative algebra and algebraic statistics many toric ideals are constructed from graphs. Keeping the categorical structure of graphs in mind we give previous results a more functorial context and generalize them by…

This paper proposes a new, visual method to study numerical semigroups and the Frobenius problem. The method is based on building a so-called reduction graph, whose nodes usually correspond to monogenic semigroups, and whose edges can have…