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Neural codes form an algebraic framework to study the nervous system, and understanding neural codes is a key goal of mathematical neuroscience. Neural rings and ideals are the tools connecting neuroscience and commutative algebra. In this…

交换代数 · 数学 2025-11-25 Trung Chau

The neural rings and ideals as an algebraic tool for analyzing the intrinsic structure of neural codes were introduced by C.~Curto et al. in 2013. Since then they were investigated in several papers, including the 2017 paper by…

交换代数 · 数学 2018-04-04 Katie Christensen , Hamid Kulosman

Neurons in the brain represent external stimuli via neural codes. These codes often arise from stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer properties…

神经元与认知 · 定量生物学 2014-09-10 Nora Youngs

Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer…

神经元与认知 · 定量生物学 2015-02-25 Carina Curto , Vladimir Itskov , Alan Veliz-Cuba , Nora Youngs

Neural codes are binary codes that are used for information processing and representation in the brain. In previous work, we have shown how an algebraic structure, called the {\it neural ring}, can be used to efficiently encode geometric…

神经元与认知 · 定量生物学 2019-02-14 Carina Curto , Nora Youngs

A major area in neuroscience research is the study of how the brain processes spatial information. Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps,…

神经元与认知 · 定量生物学 2016-10-03 Ethan Petersen , Nora Youngs , Ryan Kruse , Dane Miyata , Rebecca Garcia , Luis David Garcia Puente

The neural ideal of a binary code $\mathbb{C} \subseteq \mathbb{F}_2^n$ is an ideal in $\mathbb{F}_2[x_1,\ldots, x_n]$ closely related to the vanishing ideal of $\mathbb{C}$. The neural ideal, first introduced by Curto et al, provides an…

交换代数 · 数学 2019-08-26 R. Amzi Jeffs , Mohamed Omar , Nora Youngs

A neural code $\mathcal{C}$ is a collection of binary vectors of a given length n that record the co-firing patterns of a set of neurons. Our focus is on neural codes arising from place cells, neurons that respond to geographic stimulus. In…

神经元与认知 · 定量生物学 2016-07-05 Elizabeth Gross , Nida Kazi Obatake , Nora Youngs

Neural ideals, originally defined in arXiv:1212.4201, give a way of translating information about the firing pattern of a set of neurons into a pseudomonomial ideal in a polynomial ring. We give a simple criterion for determining whether a…

交换代数 · 数学 2022-09-22 Hugh Geller , R. G. Rebecca

The central problem with understanding brain and mind is the neural code issue: understanding the matter of our brain as basis for the phenomena of our mind. The richness with which our mind represents our environment, the parsimony of…

神经元与认知 · 定量生物学 2018-11-06 Christoph von der Malsburg

A neural code on $ n $ neurons is a collection of subsets of the set $ [n]=\{1,2,\dots,n\} $. Curto et al. \cite{curto2013neural} associated a ring $\mathcal{R}_{\mathcal{C}}$ (neural ring) to a neural code $\mathcal{C}$. A special class of…

范畴论 · 数学 2024-03-27 Neha Gupta , Suhith K N

The problem of neural coding is to understand how sequences of action potentials (spikes) are related to sensory stimuli, motor outputs, or (ultimately) thoughts and intentions. One clear question is whether the same coding rules are used…

Neural codes allow the brain to represent, process, and store information about the world. Combinatorial codes, comprised of binary patterns of neural activity, encode information via the collective behavior of populations of neurons. A…

神经元与认知 · 定量生物学 2016-12-22 Carina Curto , Elizabeth Gross , Jack Jeffries , Katherine Morrison , Mohamed Omar , Zvi Rosen , Anne Shiu , Nora Youngs

Neural ideals were introduced by Curto, Itskov, et al as an algebraic tool to study neural codes. In this paper, we use the notion of polarization introduced by G\"{u}nt\"{u}rk\"{u}n, Jeffries, and Sun to compute Betti numbers of…

交换代数 · 数学 2026-05-26 Hugh Geller , Rebecca R. G. , Alexandra Seceleanu , Nora Youngs

The informational synthesis of neural structures, processes, parameters and characteristics that allow a unified description and modeling as neural machines of natural and artificial neural systems is presented. The general informational…

神经与进化计算 · 计算机科学 2024-04-08 Iosif Iulian Petrila

A convex code is a binary code generated by the pattern of intersections of a collection of open convex sets in some Euclidean space. Convex codes are relevant to neuroscience as they arise from the activity of neurons that have convex…

神经元与认知 · 定量生物学 2018-07-10 Carina Curto , Elizabeth Gross , Jack Jeffries , Katherine Morrison , Zvi Rosen , Anne Shiu , Nora Youngs

Neurons in the brain represent information in their collective activity. The fidelity of this neural population code depends on whether and how variability in the response of one neuron is shared with other neurons. Two decades of studies…

神经元与认知 · 定量生物学 2021-02-02 Rava Azeredo da Silveira , Fred Rieke

The brain processes information about the environment via neural codes. The neural ideal was introduced recently as an algebraic object that can be used to better understand the combinatorial structure of neural codes. Every neural ideal…

An ideal of a local polynomial ring can be described by calculating a standard basis with respect to a local monomial ordering. However standard basis algorithms are not numerically stable. Instead we can describe the ideal numerically by…

代数几何 · 数学 2012-11-22 Robert Krone

For a neural code $\mathcal{C}\subseteq\mathbb{F}_2^n$, polarizing the canonical form generators of the neural ideal $J_{\mathcal{C}}$ yields a squarefree monomial ideal $\mathcal{P}(J_{\mathcal{C}})\subset k[x_1,\dots,x_n,y_1,\dots,y_n]$,…

交换代数 · 数学 2026-02-20 Selvi Kara , Ellie Lew
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