相关论文: Gr\"obner Bases of Neural Ideals
Neural ideals, originally defined in arXiv:1212.4201, give a way of translating information about the firing pattern of a set of neurons into a pseudomonomial ideal in a polynomial ring. We give a simple criterion for determining whether a…
Each linear code can be described by a code ideal given as the sum of a toric ideal and a non-prime ideal. In this way, several concepts from the theory of toric ideals can be translated into the setting of code ideals. It will be shown…
Neurons in the brain represent external stimuli via neural codes. These codes often arise from stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer properties…
Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps, associating to each neuron a convex receptive field. An important problem confronted by the brain is to infer…
A major area in neuroscience research is the study of how the brain processes spatial information. Neurons in the brain represent external stimuli via neural codes. These codes often arise from stereotyped stimulus-response maps,…
Two correspondences have been provided that associate any linear code over a finite field with a binomial ideal. In this paper, algorithms for computing their Graver bases and universal Gr\"obner bases are given. To this end, a connection…
In this paper we introduce a binomial ideal derived from a binary linear code. We present some applications of a Gr\"obner basis of this ideal with respect to a total degree ordering. In the first application we give a decoding method for…
This article aims to explore the bridge between the algebraic structure of a linear code and the complete decoding process. To this end, we associate a specific binomial ideal $I_+(\mathcal C)$ to an arbitrary linear code. The binomials…
A universal Gr\"obner basis of an ideal is the union of all its reduced Gr\"obner bases. It is contained in the Graver basis, the set of all primitive elements. Obtaining an explicit description of either of these sets, or even a sharp…
Assuming sufficiently many terms of a n-dimensional table defined over a field are given, we aim at guessing the linear recurrence relations with either constant or polynomial coefficients they satisfy. In many applications, the table terms…
An algorithm to generate a minimal comprehensive Gr\"obner\, basis of a parametric polynomial system from an arbitrary faithful comprehensive Gr\"obner\, system is presented. A basis of a parametric polynomial ideal is a comprehensive…
Given a finite set of closed rational points of affine space over a field, we give a Gr\"obner basis for the lexicographic ordering of the ideal of polynomials which vanish at all given points. Our method is an alternative to the…
The universal Gr\"{o}bner basis of $I$, is a Gr\"{o}bner basis for $I$ with respect to all term orders simultaneously. Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the elements of the universal…
The "neural code" is the way the brain characterizes, stores, and processes information. Unraveling the neural code is a key goal of mathematical neuroscience. Topology, coding theory, and, recently, commutative algebra are some the…
The neural ideal of a binary code $\mathbb{C} \subseteq \mathbb{F}_2^n$ is an ideal in $\mathbb{F}_2[x_1,\ldots, x_n]$ closely related to the vanishing ideal of $\mathbb{C}$. The neural ideal, first introduced by Curto et al, provides an…
Solving a polynomial system, or computing an associated Gr\"obner basis, has been a fundamental task in computational algebra. However, it is also known for its notorious doubly exponential time complexity in the number of variables in the…
In the field of algebraic systems biology, the number of minimal polynomial models constructed using discretized data from an underlying system is related to the number of distinct reduced Gr\"obner bases for the ideal of the data points.…
The universal Gr\"obner basis of an ideal is a Gr\"obner basis with respect to all term orders simultaneously. The aim of this paper is to present an algorithmic approach to compute the universal Gr\"obner basis for the toric ideal…
This paper studies a class of binomial ideals associated to graphs with finite vertex sets. They generalize the binomial edge ideals, and they arise in the study of conditional independence ideals. A Gr\"obner basis can be computed by…
We define a new type of ideal basis called the proper basis that improves both Gr\"obner basis and Buchberger's algorithm. Let $x_1$ be the least variable of a monomial ordering in a polynomial ring $K[x_1,\dotsc,x_n]$ over a field $K$. The…