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Analyzing kinetic experiments on protein aggregation using integrated rate laws has led to numerous advances in our understanding of the fundamental chemical mechanisms behind amyloidogenic disorders such as Alzheimer's and Parkinson's…

The 16-22 amino acid fragment of the beta-amyloid peptide associated with the Alzheimer's disease, Abeta, is capable of forming amyloid fibrils. Here we study the aggregation mechanism of Abeta(16-22) peptides by unbiased thermodynamic…

生物大分子 · 定量生物学 2009-11-10 Giorgio Favrin , Anders Irbäck , Sandipan Mohanty

The formation of amyloid fibrils comprising amyloid $\beta$ (A$\beta$) peptides is associated with the pathology of Alzheimer's disease. In this study, we theoretically investigated the A$\beta$ structure at the fibril end using the density…

The link between metals, Alzheimers disease (AD) and its implicated protein, amyloid \b{eta} (A\b{eta}), is complex and highly studied. AD is believed to occur as a result of the misfolding and aggregation of A\b{eta}. The dyshomeostasis of…

生物物理 · 物理学 2017-04-28 Francis Hane , Gary Tran , Simon Attwood , Zoya Leonenko

Alzheimer's disease (AD) is a common form of dementia observed in the elderly due to neurodegenerative disorder and dysfunction. This arises from alterations in synaptic functioning of neurons leading to cognitive impairment and memory…

神经元与认知 · 定量生物学 2010-11-19 V. Resmi , G. Ambika , R. E. Amritkar , G. Rangarajan

Amyloid beta peptides (A\b{eta}), implicated in Alzheimers disease (AD), interact with the cellular membrane and induce amyloid toxicity. The composition of cellular membranes changes in aging and AD. We designed multi component lipid…

生物物理 · 物理学 2017-11-01 Elizabeth Drolle , Alexander Negoda , Keely Hammond , Evgeny Pavlov , Zoya Leonenko

The association of epileptic activity and Alzheimer's disease (AD) has been increasingly reported in both clinical and experimental studies, suggesting that amyloid-$\beta$ accumulation may directly affect neuronal excitability. Capturing…

Motivated by the biologically important and complex phenomena of A\beta\ peptide aggregation in Alzheimer's disease, we introduce a model and simulation methodology for studying protein aggregation that includes extra-cellular aggregation,…

定量方法 · 定量生物学 2018-03-02 Youval Dar , Benjamin Bairrington , Daniel Cox , Rajiv Singh

Alzheimer's disease is characterized by dangerous amyloid plaques formed by deposits of the protein Beta-Amyloid aggregates in the brain. The specific amino acid sequence that is responsible for the aggregates of Beta-Amyloid is…

定量方法 · 定量生物学 2025-06-18 Ananya Joshi , George Khoury , Christodoulas Floudas

Abeta is a disordered peptide central to Alzheimer's Disease. Aggregation of Abeta has been widely explored, but its molecular crowding less so. The synaptic cleft where Abeta locates only holds 60-70 water molecules along its width. We…

生物物理 · 物理学 2019-08-27 Rukmankesh Mehra , Kasper P. Kepp

Pathological folding and oligomer formation of the amyloid beta-protein (Abeta) are widely perceived as central to Alzheimer's disease (AD). Experimental approaches to study Abeta self-assembly are problematic, because most relevant…

生物大分子 · 定量生物学 2009-11-13 Sijung Yun , Brigita Urbanc , Luis Cruz , Gal Bitan , David B. Teplow , H. Eugene Stanley

Alzheimer's disease (AD) is driven by the accumulation of amyloid-beta (Abeta) proteins in the brain, leading to memory loss and cognitive decline. While monoclonal antibodies targeting Abetahave been approved, optimizing their use to…

定量方法 · 定量生物学 2025-03-13 Kobra Rabiei , Jeffrey R. Petrella , Suzanne Lenhart , Chun Liu , P. Murali Doraiswamy , Wenrui Hao

Experimental evidence suggests that the folding and aggregation of the amyloid $\beta$-protein (A$\beta$) into oligomers is a key pathogenetic event in Alzheimer's disease (AD). Inhibiting the pathologic folding and oligomerization of…

生物大分子 · 定量生物学 2009-11-11 Luis Cruz , Brigita Urbanc , Jose M. Borreguero , Noel D. Lazo , David B. Teplow , H. Eugene Stanley

Inspired by recent suggestions that the Alzheimer's amyloid beta peptide (A beta) can insert into cell membranes and form harmful ion channels, we model insertion of the 40 and 42 residue forms of the peptide into cell membranes using a…

Two isoforms of beta amyloid peptides, Ab40 and Ab42, differ from each other only in the last two amino acids, IA, at the end of Ab42. They, however, differ significantly in their ability in inducing Alzheimer's disease (AD). The rate…

生物物理 · 物理学 2022-09-23 John Bridstrup , Jian-Min Yuan , John S. Schreck

We present and study a minimal structure-based model for the self-assembly of peptides into ordered beta-sheet-rich fibrils. The peptides are represented by unit-length sticks on a cubic lattice and interact by hydrogen bonding and…

生物物理 · 物理学 2013-03-12 A. Irbäck , S. Æ. Jónsson , N. Linnemann , B. Linse , S. Wallin

Alzheimer's disease (AD) is a neurodegenerative disorder that is beginning with amyloidosis, followed by neuronal loss and deterioration in structure, function, and cognition. The accumulation of amyloid-beta in the brain, measured through…

Peptides and proteins exhibit a common tendency to assemble into highly ordered fibrillar aggregates, whose formation proceeds in a nucleation-dependent manner that is often preceded by the formation of disordered oligomeric assemblies.…

生物大分子 · 定量生物学 2009-01-14 Stefan Auer , Christopher M. Dobson , Michele Vendruscolo , Amos Maritan

Accumulation of amyloid beta proteins is a defining feature of Alzheimer's disease, and is usually accompanied by cerebrovascular pathology. Evidence suggests that amyloid beta and cerebrovascular pathology are mutually reinforcing; in…

数值分析 · 数学 2026-01-14 Mattia Corti , Andrew Ahern , Alain Goriely , Ellen Kuhl , Paola F. Antonietti

Over the past thirty years, researchers have highlighted the role played by a class of proteins or polypeptides that forms pathogenic amyloid aggregates in vivo, including i) the amyloid Abeta peptide, which is known to form senile plaques…

生物物理 · 物理学 2022-09-23 Carmelo Tempra , Federica Scollo , Martina Pannuzzo , Fabio Lolicato , Carmelo La Rosa
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