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Comparing and computing distances between phylogenetic trees are important biological problems, especially for models where edge lengths play an important role. The geodesic distance measure between two phylogenetic trees with edge lengths…

种群与进化 · 定量生物学 2009-11-05 Megan Owen , J. Scott Provan

Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…

数据结构与算法 · 计算机科学 2020-06-29 Sean Cleary , Haris Nadeem

Geodesic distance, commonly called shortest path length, has proved useful in a great variety of disciplines. It has been playing a significant role in search engine at present and so attracted considerable attention at the last few…

组合数学 · 数学 2019-09-17 Xudong Luo , Fei Ma , Wentao Xu

Given a surface $\Sigma$ equipped with a set $P$ of marked points, we consider the triangulations of $\Sigma$ with vertex set $P$. The flip-graph of $\Sigma$ whose vertices are these triangulations, and whose edges correspond to flipping…

几何拓扑 · 数学 2025-03-19 Hugo Parlier , Lionel Pournin

Consider all geodesics between two given points on a polyhedron. On the regular tetrahedron, we describe all the geodesics from a vertex to a point, which could be another vertex. Using the Stern--Brocot tree to explore the recursive…

度量几何 · 数学 2015-08-17 Diana Davis , Victor Dods , Cynthia Traub , Jed Yang

Geodesic distance, sometimes called shortest path length, has proven useful in a great variety of applications, such as information retrieval on networks including treelike networked models. Here, our goal is to analytically determine the…

组合数学 · 数学 2020-10-29 Fei Ma , Ping Wang , Xudong Luo

Rotation distance between rooted binary trees is the minimum number of simple rotations needed to transform one tree into the other. Computing the rotation distance between a pair of rooted trees can be quickly reduced in cases where there…

数据结构与算法 · 计算机科学 2020-03-05 Sean Cleary , Roland Maio

Flip graphs are a ubiquitous class of graphs, which encode relations induced on a set of combinatorial objects by elementary, local changes. Skeletons of associahedra, for instance, are the graphs induced by quadrilateral flips in…

The topological (resp. geodesic) complexity of a topological (resp. metric) space is roughly the smallest number of continuous rules required to choose paths (resp. shortest paths) between any points of the space. We prove that the geodesic…

度量几何 · 数学 2023-08-09 Donald M. Davis

We present two algorithms for computing the geodesic distance between phylogenetic trees in tree space, as introduced by Billera, Holmes, and Vogtmann (2001). We show that the possible combinatorial types of shortest paths between two trees…

组合数学 · 数学 2011-06-08 Megan Owen

Many statistical and machine learning approaches rely on pairwise distances between data points. The choice of distance metric has a fundamental impact on performance of these procedures, raising questions about how to appropriately…

统计理论 · 数学 2020-04-20 Didong Li , David B Dunson

The associahedron $\mathcal{A}(G)$ of a graph $G$ has the property that its vertices can be thought of as the search trees on $G$ and its edges as the rotations between two search trees. If $G$ is a simple path, then $\mathcal{A}(G)$ is the…

组合数学 · 数学 2023-11-28 Jean Cardinal , Lionel Pournin , Mario Valencia-Pabon

A complete treatment of the intersections of two geodesics on the surface of an ellipsoid of revolution is given. With a suitable metric for the distances between intersections, bounds are placed on their spacing. This leads to fast and…

地球物理 · 物理学 2024-04-02 Charles F. F. Karney

Flips in triangulations of convex polygons arise in many different settings. They are isomorphic to rotations in binary trees, define edges in the 1-skeleton of the Associahedron and cover relations in the Tamari Lattice. The complexity of…

计算几何 · 计算机科学 2026-02-27 Joseph Dorfer

It is known that for a variety of choices of metrics, including the standard bottleneck distance, the space of persistence diagrams admits geodesics. Typically these existence results produce geodesics that have the form of a convex…

度量几何 · 数学 2019-05-28 Samir Chowdhury

In many singular metric spaces, the regularity of a shortest-length curve is unknown. Algebraic varieties, or more generally sets defined by finitely many polynomial or real analytic equalities or inequalities, all locally partition into…

微分几何 · 数学 2023-01-30 Chengcheng Yang

The existence of the limiting pair correlation for angles between reciprocal geodesics on the modular surface is established. An explicit formula is provided, which captures geometric information about the length of reciprocal geodesics, as…

A spanner graph on a set of points in $R^d$ contains a shortest path between any pair of points with length at most a constant factor of their Euclidean distance. In this paper we investigate new models and aim to interpret why good…

计算几何 · 计算机科学 2015-05-13 Jie Gao , Dengpan Zhou

We study the statistical properties of geodesics, i.e. paths of minimal length, in large random planar quadrangulations. We extend Schaeffer's well-labeled tree bijection to the case of quadrangulations with a marked geodesic, leading to…

数学物理 · 物理学 2008-05-15 J. Bouttier , E. Guitter

Numerical computation of shortest paths or geodesics on curved domains, as well as the associated geodesic distance, arises in a broad range of applications across digital geometry processing, scientific computing, computer graphics, and…

图形学 · 计算机科学 2020-07-22 Keenan Crane , Marco Livesu , Enrico Puppo , Yipeng Qin
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