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Large networks are useful in a wide range of applications. Sometimes problem instances are composed of billions of entities. Decomposing and analyzing these structures helps us gain new insights about our surroundings. Even if the final…

Detection of curvilinear structures in images has long been of interest. One of the most challenging aspects of this problem is inferring the graph representation of the curvilinear network. Most existing delineation approaches first…

计算机视觉与模式识别 · 计算机科学 2019-05-13 Agata Mosinska , Mateusz Kozinski , Pascal Fua

Many real-world complex networks are best modeled as bipartite (or 2-mode) graphs, where nodes are divided into two sets with links connecting one side to the other. However, there is currently a lack of methods to analyze properly such…

社会与信息网络 · 计算机科学 2011-10-28 Oussama Allali , Lionel Tabourier , Clémence Magnien , Matthieu Latapy

The rich and varied ways that genetic material can be passed between species has motivated extensive research into the theory of phylogenetic networks. Features that align with biological processes, or with desirable mathematical…

种群与进化 · 定量生物学 2025-08-12 Andrew Francis

We suggest a new perspective of research towards understanding the relations between structure and dynamics of a complex network: Can we design a network, e.g. by modifying the features of units or interactions, such that it exhibits a…

神经元与认知 · 定量生物学 2009-11-13 Raoul-Martin Memmesheimer , Marc Timme

Network embedding methods aim at learning low-dimensional latent representation of nodes in a network. These representations can be used as features for a wide range of tasks on graphs such as classification, clustering, link prediction,…

社会与信息网络 · 计算机科学 2018-08-09 Haochen Chen , Bryan Perozzi , Rami Al-Rfou , Steven Skiena

When artificial neural networks have demonstrated exceptional practical success in a variety of domains, investigations into their theoretical characteristics, such as their approximation power, statistical properties, and generalization…

机器学习 · 统计学 2023-10-06 Shijin Gong , Xinyu Zhang

Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations for a large variety of real systems whose elements interact in multiple fashions or flavors. However,…

物理与社会 · 物理学 2024-02-27 Daniel Kaiser , Siddharth Patwardhan , Minsuk Kim , Filippo Radicchi

Biological networks provide insight into the complex organization of biological processes in a cell at the system level. They are an effective tool for understanding the comprehensive map of functional interactions, finding the functional…

分子网络 · 定量生物学 2017-09-14 Somaye Hashemifar

1-planar graphs are graphs that can be drawn in the plane such that any edge intersects with at most one other edge. Ackerman showed that the edges of a 1-planar graph can be partitioned into a planar graph and a forest, and claims that the…

数据结构与算法 · 计算机科学 2021-05-03 Sam Barr , Therese Biedl

Polyploidization is an important evolutionary process which affects organisms ranging from plants to fish and fungi. The signal left behind by it is in the form of a species' ploidy level (number of complete chromosome sets found in a cell)…

种群与进化 · 定量生物学 2022-11-10 Liam J. Maher , Taoyang Wu , Katharina T. Huber

Graph convolutional networks (GCNs) are a widely used method for graph representation learning. We investigate the power of GCNs, as a function of their number of layers, to distinguish between different random graph models on the basis of…

机器学习 · 统计学 2020-02-14 Abram Magner , Mayank Baranwal , Alfred O. Hero

Methods for detecting community structure in networks typically aim to identify a single best partition of network nodes into communities, often by optimizing some objective function, but in real-world applications there may be many…

社会与信息网络 · 计算机科学 2022-02-18 Alec Kirkley , M. E. J. Newman

In the last decade it became apparent that a large number of the most interesting structures and phenomena of the world can be described by networks: separable elements, with connections (or interactions) between certain pairs of them.…

组合数学 · 数学 2009-02-03 Laszlo Lovasz

Networks are a fundamental model of complex systems throughout the sciences, and network datasets are typically analyzed through lower-order connectivity patterns described at the level of individual nodes and edges. However, higher-order…

社会与信息网络 · 计算机科学 2018-02-21 Austin R. Benson

In mathematical phylogenetics, evolutionary relationships are often represented by trees and networks. The latter are typically used whenever the relationships cannot be adequately described by a tree, which happens when so-called…

种群与进化 · 定量生物学 2025-12-05 Mirko Wilde , Mareike Fischer

We study the problem of visualizing phylogenetic networks, which are extensions of the Tree of Life in biology. We use a space filling visualization method, called DAGmaps, in order to obtain clear visualizations using limited space. In…

数据结构与算法 · 计算机科学 2016-09-06 Ioannis G. Tollis , Konstantinos G. Kakoulis

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

社会与信息网络 · 计算机科学 2024-02-01 Alexandre Benatti , Luciano da F. Costa

The study of networks plays a crucial role in investigating the structure, dynamics, and function of a wide variety of complex systems in myriad disciplines. Despite the success of traditional network analysis, standard networks provide a…

物理与社会 · 物理学 2017-04-05 Manlio De Domenico , Clara Granell , Mason A. Porter , Alex Arenas

Planes are familiar mathematical objects which lie at the subtle boundary between continuous geometry and discrete combinatorics. A plane is geometrical, certainly, but the ways that two planes can interact break cleanly into discrete sets:…

历史与综述 · 数学 2025-04-17 Stefan Forcey