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We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

计算复杂性 · 计算机科学 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

Solutions of semiflexible polymers confined by repulsive planar walls are studied by density functional theory and Molecular Dynamics simulations, to clarify the competition between the chain alignment favored by the wall and the depletion…

软凝聚态物质 · 物理学 2016-05-25 Sergei A. Egorov , Andrey Milchev , Peter Virnau , Kurt Binder

The paper identifies families of quasi-stationary initial conditions for infinite Brownian particle systems within a large class and provides a construction of the particle systems themselves started from such initial conditions. Examples…

概率论 · 数学 2015-04-24 Mykhaylo Shkolnikov

We propose a general framework for solving inverse self-assembly problems, i.e. designing interactions between elementary units such that they assemble spontaneously into a predetermined structure. Our approach uses patchy particles as…

软凝聚态物质 · 物理学 2022-07-13 John Russo , Flavio Romano , Lukas Kroc , Francesco Sciortino , Lorenzo Rovigatti , Petr Sulc

We propose in this paper a generic model of a non-standard aggregation mechanism for self-assembly processes of a class of materials involving the mediation of intermediates consisting of a polydisperse population of nano-sized particles.…

Geometric frustration offers a pathway to soft matter self-assembly with controllable finite sizes. While the understanding of frustration in soft matter assembly derives almost exclusively from continuum elastic descriptions, a current…

软凝聚态物质 · 物理学 2023-08-08 Douglas M. Hall , Mark J. Stevens , Gregory M. Grason

We study the repeated balls-into-bins process introduced by Becchetti, Clementi, Natale, Pasquale and Posta (2019). This process starts with $m$ balls arbitrarily distributed across $n$ bins. At each round $t=1,2,\ldots$, one ball is…

离散数学 · 计算机科学 2023-03-15 Dimitrios Los , Thomas Sauerwald

Spontaneous formation of knots in long polymers at equilibrium is inevitable but becomes rare in sufficiently short chains. Here, we show that knotting and knot complexity increase by orders of magnitude in diblock polymers with a fraction…

软凝聚态物质 · 物理学 2024-07-11 Marin Vatin , Enzo Orlandini , Emanuele Locatelli

We present results about large deviations and laws of large numbers for various polymer related quantities. In a completely general setting and strictly positive temperature, we present results about large deviations for directed polymers…

概率论 · 数学 2012-10-03 Nicos Georgiou

If particles interact according to isotropic pair potentials that favor multiple length scales, in principle a large variety of different complex structures can be achieved by self-assembly. We present, motivate, and discuss a conjecture…

软凝聚态物质 · 物理学 2018-11-07 Erdal C. Oğuz , Aleksandar Mijailović , Michael Schmiedeberg

This paper is concerned with linear parameter-dependent systems and considers the notion uniform ensemble reachability. The focus of this work is on constructive methods to compute suitable parameter-independent open-loop inputs for such…

最优化与控制 · 数学 2023-06-16 Michael Schönlein

We use computer simulations to investigate self-assembly in a system of model chaperonin proteins, and in an Ising lattice gas. We discuss the mechanisms responsible for rapid and efficient assembly in these systems, and we use measurements…

软凝聚态物质 · 物理学 2011-12-09 James Grant , Robert L. Jack , Stephen Whitelam

In this paper we study a polynomial time algorithms that for an input $A\subseteq {B_m}$ outputs a decision tree for $A$ of minimum depth. This problem has many applications that include, to name a few, computer vision, group testing, exact…

数据结构与算法 · 计算机科学 2018-02-02 Nader H. Bshouty , Waseem Makhoul

We consider sequences of integers defined by a system of linear inequalities with integer coefficients. We show that when the constraints are strong enough to guarantee that all the entries are nonnegative, the generating function for the…

组合数学 · 数学 2007-05-23 S. Corteel , C. D. Savage

Self-limiting assembly of particles represents the state-of-the-art controllability in nanomanufacturing processes where the assembly stops at a designated stage1,2, providing a desirable platform for applications requiring delicate…

原子与分子团簇 · 物理学 2021-11-02 Liang Zhao , Bchara Sidnawi , Jichao Fan , Ruiyang Chen , Thomas Scully , Scott Dietrich , Weilu Gao , Qianhong Wu , Bo Li

We present a new simulation technique to study systems of polymers functionalized by reactive sites that bind/unbind forming reversible linkages. Functionalized polymers feature self-assembly and responsive properties that are unmatched by…

软凝聚态物质 · 物理学 2018-04-18 Bernardo Oyarzún , Bortolo Matteo Mognetti

Half-space directed polymers in random environments are models of interface growth in the presence of an attractive hard wall. They arise naturally in the study of wetting and entropic repulsion phenomena. In 1985, Kardar predicted a…

概率论 · 数学 2024-10-22 Victor Ginsburg

In this paper, we investigate a stochastic model describing the time evolution of a polymerization process. A polymer is a macro-molecule resulting from the aggregation of several elementary sub-units called monomers. Polymers can grow by…

概率论 · 数学 2018-08-24 Philippe Robert , Wen Sun

The process of adsorption on a planar repulsive, "marginal" and attractive wall of long-flexible polymer chains with excluded volume interactions is investigated. The performed scaling analysis is based on formal analogy between the polymer…

软凝聚态物质 · 物理学 2009-10-08 Z. Usatenko

In this work we studied polymerization-induced self-assembly by means of computer simulations. Using this model, phase diagrams of the micelle states were constructed depending on the polymer concentration and the asymmetry of the…

软凝聚态物质 · 物理学 2020-11-17 Ruslan Shupanov , Pavel Kos , Alexei Gavrilov , Alexander Chertovich