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We calculate the two, three, four, and five-body (state independent) effective potentials between the centers of mass (CM) of self avoiding walk polymers by Monte-Carlo simulations. For full overlap, these coarse-grained n-body interactions…

软凝聚态物质 · 物理学 2009-11-07 P. G. Bolhuis , A. A. Louis , J. P. Hansen

How a closed system thermalizes, especially in the absence of global conservation laws but in the presence of disorder and interactions, is one of the central questions in non-equilibrium statistical mechanics. We explore this for a…

无序系统与神经网络 · 物理学 2025-02-25 Soumya Bera , Ishita Modak , Roderich Moessner

Temporal correlations in the time series observed in various systems have been characterized by the autocorrelation function. Such correlations can be explained by heavy-tailed interevent time distributions as well as by correlations…

计算物理 · 物理学 2025-06-17 Min-ho Yu , Hang-Hyun Jo

A mode-coupling theory for dense polymeric systems is developed which unifyingly incorporates the segmental cage effect relevant for structural slowing down and polymer chain conformational degrees of freedom. An ideal glass transition of…

软凝聚态物质 · 物理学 2009-11-07 S. -H. Chong , M. Fuchs

We define optimal per-particle fluctuation and correlation measures, relate fluctuations and correlations through an integral equation and show how to invert that equation to obtain precise autocorrelations from fluctuation scale…

高能物理 - 唯象学 · 物理学 2009-11-11 Duncan J Prindle , Thomas A Trainor

The translocation time of a polymer chain through an interaction energy gradient nanopore was studied by Monte Carlo simulations and the Fokker-Planck equation with double-absorbing boundary conditions. Both the simulation and calculation…

软凝聚态物质 · 物理学 2017-01-04 Meng-Bo Luo , Shuang Zhang , Fan Wu , Li-Zhen Sun

The time sequences of the molecular dynamics simulation for the folding process of a protein is analyzed with the inherent structure landscape which focuses on configurational dynamics of the system. Time dependent energy and entropy for…

统计力学 · 物理学 2013-02-13 Naoko Nakagawa

In finite-size scaling analyses of Monte Carlo simulations of second-order phase transitions one often needs an extended temperature range around the critical point. By combining the parallel tempering algorithm with cluster updates and an…

统计力学 · 物理学 2015-05-28 Elmar Bittner , Wolfhard Janke

Simulations of QCD suffer from severe critical slowing down towards the continuum limit. This problem is known to be prominent in the topological charge, however, all observables are affected to various degree by these slow modes in the…

高能物理 - 格点 · 物理学 2011-07-15 Stefan Schaefer , Francesco Virotta

We use molecular dynamics simulations to study the dynamics of an ensemble of interacting self-propelled semi-flexible polymers in contact with a thermal bath. Our intention is to model complex systems of biological interest. We find that…

软凝聚态物质 · 物理学 2011-05-06 Davide Loi , Stefano Mossa , Leticia F. Cugliandolo

The hydrodynamic part of the velocity autocorrelation function of a granular fluid in the homogeneous cooling state has been calculated by using mode-coupling theory for a finite system with periodic boundary conditions. The existence of…

统计力学 · 物理学 2015-06-23 J. Javier Brey , M. J. Ruiz-Montero

We present a detailed study of the finite temperature dynamical properties of the quantum Potts model in one dimension.Quasiparticle excitations in this model have internal quantum numbers, and their scattering matrix {\gf deep} in the…

强关联电子 · 物理学 2009-11-11 Akos Rapp , Gergely Zarand

Ultracold polar molecules, in highly anisotropic traps and interacting via a repulsive dipolar potential, may form one-dimensional chains at high densities. According to classical theory, at low temperatures there exists a critical value of…

介观与纳米尺度物理 · 物理学 2015-05-13 G. E. Astrakharchik , Gabriele De Chiara , Giovanna Morigi , Jordi Boronat

We present cluster Monte Carlo algorithms for the $XYZ$ quantum spin models. In the special case of $S=1/2$, the new algorithm can be viewed as a cluster algorithm for the 8-vertex model. As an example, we study the $S=1/2$ $XY$ model in…

凝聚态物理 · 物理学 2009-10-28 N. Kawashima

We propose a path-integral variant of the DMRG method to calculate real-time correlation functions at arbitrary finite temperatures. To illustrate the method we study the longitudinal autocorrelation function of the $XXZ$-chain. By…

强关联电子 · 物理学 2007-05-23 J. Sirker , A. Klümper

We compute numerical simulations of spherical collapse triggered by a slow increase in external pressure. We compare isothermal models to models including cooling with a simple but self-consistent treatment of the coupling between gas,…

天体物理学 · 物理学 2009-11-11 P. Lesaffre , A. Belloche , J. -P. Chieze , P. Andre

We investigate correlation time numerically in extremal self-organized critical models, namely, the Bak-Sneppen evolution and the Robin Hood dynamics. The (fitness) correlation time is the duration required for the extinction or mutation of…

统计力学 · 物理学 2025-01-08 Rahul Chhimpa , Abha Singh , Avinash Chand Yadav

We study the Langevin dynamics of a heteropolymer by means of a mode-coupling approximation scheme, giving rise to a set of coupled integro-differential equations relating the response and correlation functions. The analysis shows that…

无序系统与神经网络 · 物理学 2007-05-23 Estelle Pitard , Eugene I. Shakhnovich

We investigate the cooperative effects of a single finite chain of monomers near an attractive substrate by first constructing a conformational pseudo-phase diagram based on the thermal fluctuations of energetic and structural quantities.…

软凝聚态物质 · 物理学 2011-07-01 Monika Möddel , Wolfhard Janke , Michael Bachmann

Monte Carlo computer simulations are virtually the only way to analyze the thermodynamic behavior of a system in a precise way. However, the various existing methods exhibit extreme differences in their efficiency, depending on model…

统计力学 · 物理学 2011-07-05 Michael Bachmann