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Motivated by the biologically important and complex phenomena of A\beta\ peptide aggregation in Alzheimer's disease, we introduce a model and simulation methodology for studying protein aggregation that includes extra-cellular aggregation,…

定量方法 · 定量生物学 2018-03-02 Youval Dar , Benjamin Bairrington , Daniel Cox , Rajiv Singh

Alzheimer's disease causes severe neurodegeneration in the brain that leads to a certain death. The defining factor is the formation of extracellular senile amyloid plaques in the brain. However, therapeutic approaches to remove them have…

生物大分子 · 定量生物学 2011-09-07 Andrei Krokhotin , Antti J. Niemi

Amyloid beta peptides (A\b{eta}), implicated in Alzheimers disease (AD), interact with the cellular membrane and induce amyloid toxicity. The composition of cellular membranes changes in aging and AD. We designed multi component lipid…

生物物理 · 物理学 2017-11-01 Elizabeth Drolle , Alexander Negoda , Keely Hammond , Evgeny Pavlov , Zoya Leonenko

Protein aggregates in the brain play a central role in cognitive decline and structural damage associated with neurodegenerative diseases. For instance, in Alzheimer's disease the formation of Amyloid-beta plaques and tau proteins…

生物大分子 · 定量生物学 2021-04-07 Travis B. Thompson , Georg Meisl , Tuomas Knowles , Alain Goriely

Studies of how protein fold have shown that the way protein clumps form in the test tube is similar to how proteins form the so-called ``amyloid'' deposits that are the pathological signal of a variety of diseases, among them the memory…

凝聚态物理 · 物理学 2009-10-31 R. A. Broglia , G. Tiana , S. Pasquali , H. E. Roman , E. Vigezzi

Over the past thirty years, researchers have highlighted the role played by a class of proteins or polypeptides that forms pathogenic amyloid aggregates in vivo, including i) the amyloid Abeta peptide, which is known to form senile plaques…

生物物理 · 物理学 2022-09-23 Carmelo Tempra , Federica Scollo , Martina Pannuzzo , Fabio Lolicato , Carmelo La Rosa

Interactions mediated by the cell membrane between inclusions, such as membrane proteins or antimicrobial peptides, play important roles in their biological activity. They also constitute a fascinating challenge for physicists, since they…

生物物理 · 物理学 2019-03-15 Anne-Florence Bitbol , Doru Constantin , Jean-Baptiste Fournier

The presence of oligomeric aggregates, which is often observed during the process of amyloid formation, has recently attracted much attention since it has been associated with neurodegenerative conditions such as Alzheimer's and Parkinson's…

生物大分子 · 定量生物学 2009-01-14 Stefan Auer , Filip Meersman , Christopher M. Dobson , Michele Vendruscolo

Alzheimer's disease is characterized by dangerous amyloid plaques formed by deposits of the protein Beta-Amyloid aggregates in the brain. The specific amino acid sequence that is responsible for the aggregates of Beta-Amyloid is…

定量方法 · 定量生物学 2025-06-18 Ananya Joshi , George Khoury , Christodoulas Floudas

Peptides and proteins exhibit a common tendency to assemble into highly ordered fibrillar aggregates, whose formation proceeds in a nucleation-dependent manner that is often preceded by the formation of disordered oligomeric assemblies.…

生物大分子 · 定量生物学 2009-01-14 Stefan Auer , Christopher M. Dobson , Michele Vendruscolo , Amos Maritan

We introduce a mathematical model of the in vivo progression of Alzheimer's disease with focus on the role of prions in memory impairment. Our model consists of differential equations that describe the dynamic formation of {\beta}-amyloid…

经典分析与常微分方程 · 数学 2015-09-10 Mohamed Helal , Erwan Hingant , Laurent Pujo-Menjouet , Glenn F. Webb

The need to understand the assembly kinetics of fibril formation has become urgent because of the realization that soluble oligomers of amyloidogenic peptides may be even more neurotoxic than the end product, namely, the amyloid fibrils. In…

生物大分子 · 定量生物学 2007-05-23 Ruxandra I. Dima , Bogdan Tarus , John E. Straub , D. Thirumalai

The 16-22 amino acid fragment of the beta-amyloid peptide associated with the Alzheimer's disease, Abeta, is capable of forming amyloid fibrils. Here we study the aggregation mechanism of Abeta(16-22) peptides by unbiased thermodynamic…

生物大分子 · 定量生物学 2009-11-10 Giorgio Favrin , Anders Irbäck , Sandipan Mohanty

We introduce and study a new model for the progression of Alzheimer's disease incorporating the interactions of A$\beta$-monomers, oligomers, microglial cells and interleukins with neurons through different mechanisms such as protein…

The amyloid $\beta$ peptide (A$\beta$42), whose aggregation is associated with Alzheimer's disease, is an amphiphatic peptide with a high propensity to self-assemble. A$\beta$42 has a net negative charge at physiological pH and modulations…

分子网络 · 定量生物学 2020-08-25 Georg Meisl , Xiaoting Yang , Christopher M. Dobson , Sara Linse , Tuomas P. J. Knowles

Protein aggregation in the form of amyloid fibrils has important biological and technological implications. Although the self-assembly process is highly efficient, aggregates not in the fibrillar form would also occur and it is important to…

软凝聚态物质 · 物理学 2010-01-20 Chiu Fan Lee

A variety of neurodegenerative diseases are associated with the formation of amyloid plaques. Our incomplete understanding of this process underscores the need to decipher the principles governing protein aggregation. Most experimental and…

软凝聚态物质 · 物理学 2011-07-26 D. Thirumalai , Govardhan Reddy , John E. Straub

Amyloid fibrils are stable aggregates of misfolded proteins and polypeptides that are insoluble and resistant to protease activity. Abnormal formation of amyloid fibrils in vivo may lead to neurodegenerative disorders and other systemic…

生物大分子 · 定量生物学 2018-05-22 Boris Haimov , Simcha Srebnik

Membrane bending is an extensively studied problem from both modeling and experimental perspectives because of the wide implications of curvature generation in cell biology. Many of the curvature generating aspects in membranes can be…

软凝聚态物质 · 物理学 2021-07-21 Arijit Mahapatra , David Saintillan , Padmini Rangamani

The spatio-temporal organization of proteins and the associated morphological changes in membranes are of importance in cell signaling. Several mechanisms that promote the aggregation of proteins at low cell surface concentrations have been…

生物物理 · 物理学 2018-04-18 K. K. Sreeja , P. B. Sunil Kumar
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