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We prove a negative result on the power of a model of algorithmic self-assembly for which it has been notoriously difficult to find general techniques and results. Specifically, we prove that Winfree's abstract Tile Assembly Model, when…

Working in a three-dimensional variant of Winfree's abstract Tile Assembly Model, we show that, for all $N \in \mathbb{N}$, there is a tile set that uniquely self-assembles into an $N \times N$ square shape at temperature 1 with optimal…

计算几何 · 计算机科学 2014-11-06 David Furcy , Samuel Micka , Scott M. Summers

In this work we propose a generalization of Winfree's abstract Tile Assembly Model (aTAM) in which tile types are assigned rigid shapes, or geometries, along each tile face. We examine the number of distinct tile types needed to assemble…

计算几何 · 计算机科学 2015-03-19 Bin Fu , Matthew J. Patitz , Robert T. Schweller , Bobby Sheline

We prove the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile Assembly Model, when restricted to…

计算复杂性 · 计算机科学 2015-07-31 Pierre-Étienne Meunier , Damien Regnault

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

计算复杂性 · 计算机科学 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

We prove a Pumping Lemma for the noncooperative abstract Tile Assembly Model, a model central to the theory of algorithmic self-assembly since the beginning of the field. This theory suggests, and our result proves, that small differences…

计算复杂性 · 计算机科学 2020-02-11 Pierre-Étienne Meunier , Damien Regnault , Damien Woods

We consider non-cooperative binding, so-called 'temperature 1', in deterministic or directed (called here confluent) tile self-assembly systems in two dimensions and show a necessary and sufficient condition for such system to have an…

计算复杂性 · 计算机科学 2022-02-11 Jérôme Durand-Lose , Hendrik Jan Hoogeboom , Nataša Jonoska

Working in a three-dimensional variant of Winfree's abstract Tile Assembly Model, we show that, for an arbitrary finite, connected shape $X \subset \mathbb{Z}^2$, there is a tile set that uniquely self-assembles into a 3D representation of…

计算几何 · 计算机科学 2015-07-24 David Furcy , Scott M. Summers

Winfree's abstract Tile Assembly Model (aTAM) is a model of molecular self-assembly of DNA complexes known as tiles, which float freely in solution and attach one at a time to a growing "seed" assembly based on specific binding sites on…

计算复杂性 · 计算机科学 2015-03-17 Ho-Lin Chen , David Doty , Shinnosuke Seki

We investigate a fundamental question regarding a benchmark class of shapes in one of the simplest, yet most widely utilized abstract models of algorithmic tile self-assembly. Specifically, we study the directed tile complexity of a $k…

数据结构与算法 · 计算机科学 2020-07-23 David Furcy , Scott M. Summers , Logan Withers

In this paper, we study the minimum number of unique tile types required for the self-assembly of thin rectangles in Winfree's abstract Tile Assembly Model (aTAM), restricted to temperature-1. Using Catalan numbers, planar self-assembly and…

计算几何 · 计算机科学 2019-06-18 David Furcy , Scott M. Summers , Christian Wendlandt

This paper concerns the self-assembly of scaled-up versions of arbitrary finite shapes. We work in the multiple temperature model that was introduced by Aggarwal, Cheng, Goldwasser, Kao, and Schweller (Complexities for Generalized Models of…

计算复杂性 · 计算机科学 2009-09-30 Scott M. Summers

We define the Reflexive Tile Assembly Model (RTAM), which is obtained from the abstract Tile Assembly Model (aTAM) by allowing tiles to reflect across their horizontal and/or vertical axes. We show that the class of directed temperature-1…

计算几何 · 计算机科学 2015-03-13 Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

The field of algorithmic self-assembly is concerned with the computational and expressive power of nanoscale self-assembling molecular systems. In the well-studied cooperative, or temperature 2, abstract tile assembly model it is known that…

计算复杂性 · 计算机科学 2017-05-31 Pierre-Étienne Meunier , Damien Woods

We consider the tile self-assembly model and how tile complexity can be eliminated by permitting the temperature of the self-assembly system to be adjusted throughout the assembly process. To do this, we propose novel techniques for…

计算复杂性 · 计算机科学 2007-05-23 Ming-Yang Kao , Robert Schweller

In this paper, we work in a 2D version of the probabilistic variant of Winfree's abstract Tile Assembly Model defined by Chandran, Gopalkrishnan and Reif (SICOMP 2012) in which attaching tiles are sampled uniformly with replacement. First,…

数据结构与算法 · 计算机科学 2024-08-13 David Furcy , Scott M. Summers

We investigate the power of the Wang tile self-assembly model at temperature 1, a threshold value that permits attachment between any two tiles that share even a single bond. When restricted to deterministic assembly in the plane, no…

计算复杂性 · 计算机科学 2015-03-13 Matthew Cook , Yunhui Fu , Robert T. Schweller

We show the first asymptotically efficient constructions in the so-called "noncooperative planar tile assembly" model. Algorithmic self-assembly is the study of the local, distributed, asynchronous algorithms ran by molecules to…

计算复杂性 · 计算机科学 2021-07-19 Pierre-Etienne Meunier , Damien Regnault

We show the first non-trivial positive algorithmic results (i.e. programs whose output is larger than their size), in a model of self-assembly that has so far resisted many attempts of formal analysis or programming: the planar…

计算几何 · 计算机科学 2014-07-11 Pierre-Étienne Meunier

In the abstract Tile Assembly Model, self-assembling systems consisting of tiles of different colors can form structures on which colored patterns are ``painted.'' We explore the complexity, in terms of the numbers of unique tile types…

新兴技术 · 计算机科学 2024-03-12 Phillip Drake , Matthew J. Patitz , Scott M. Summers , Tyler Tracy
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