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We study how the dynamic equilibrium of the reversible protein-protein binding network in yeast Saccharomyces cerevisiae responds to large changes in abundances of individual proteins. The magnitude of shifts between free and bound…

分子网络 · 定量生物学 2007-08-20 Sergei Maslov , I. Ispolatov

We numerically study excitation transfer in an artificial LH1-RC complex -- an $N$-site donor ring coupled to a central acceptor -- driven by a narrowband optical mode and evolved under a Lindblad master equation with loss and dephasing. In…

光学 · 物理学 2025-09-27 Stephon Alexander , Roger Andrews , Oliver Fox , Sarben Sarkar

Controlling the transport of thermal energy is key to most applications of metal-organic frameworks. Analyzing the evolution of the effective local temperature, the interfaces between the metal nodes and the organic linkers are identified…

Charge transfer is a fundamental phenomenon in biology and chemistry, and involves the movement of charge through a system driven by nuclear dynamics. Because of the involvement of nuclear motion, it is generally assumed that charge…

化学物理 · 物理学 2024-08-27 Simon P. Neville , Martha Yaghoubi Jouybari , Michael S. Schuurman

A generic and intuitive model for coherent energy transport in multiple minima systems coupled to a quantum mechanical bath is shown. Using a simple spin-boson system, we illustrate how a generic donor-acceptor system can be brought into…

生物物理 · 物理学 2014-06-24 Tristan Farrow , Vlatko Vedral

We study unbiased discrete random walks on the FSFT based on the its self-similar structure and the relations between random walks and electrical networks. First, we provide new methods to derive analytic solutions of the MFPT for any pair…

统计力学 · 物理学 2015-09-18 Junhao Peng , Guoai Xu

Flow of particles of two different species through a narrow channel with solely two discrete spatial positions is analyzed with respect to the species' capability to cooperate or compete for transport. In contrast to mean field approaches,…

软凝聚态物质 · 物理学 2017-12-13 Wolfgang Rudolf Bauer

Energy evaluation using fast Fourier transforms enables sampling billions of putative complex structures and hence revolutionized rigid protein-protein docking. However, in current methods efficient acceleration is achieved only in either…

A finite (periodic) FPU chain is chosen as a convenient point for investigating the energy exchange phenomenon in nonlinear oscillatory systems. As we have recently shown, this phenomenon may occur as a consequence of the resonant…

斑图形成与孤子 · 物理学 2015-06-11 V. V. Smirnov , D. S. Shepelev , L. I. Manevitch

In this paper, we propose feature-based federated transfer learning as a novel approach to improve communication efficiency by reducing the uplink payload by multiple orders of magnitude compared to that of existing approaches in federated…

机器学习 · 计算机科学 2024-05-16 Feng Wang , M. Cenk Gursoy , Senem Velipasalar

A novel mechanism for switching a molecular junction based on a proton transfer reaction triggered by an external electrostatic field is proposed. As a specific example to demonstrate the feasibility of the mechanism, the tautomers…

介观与纳米尺度物理 · 物理学 2014-04-18 C. Hofmeister , R. Härtle , O. Rubio-Pons , P. B. Coto , A. L. Sobolewski , M. Thoss

The observed modification of thermal chemical rates in Fabry-Perot cavities remains a poorly understood effect theoretically. Recent breakthroughs explain some of the observations through the Grote-Hynes theory, where the cavity introduces…

化学物理 · 物理学 2022-04-05 Jing Sun , Oriol Vendrell

We present a detailed analysis, based on the Forward Flux Sampling (FFS) simulation method, of the switching dynamics and stability of two models of genetic toggle switches, consisting of two mutually-repressing genes encoding transcription…

分子网络 · 定量生物学 2009-11-13 M. J. Morelli , S. Tanase-Nicola , R. J. Allen , P. R. ten Wolde

Motivated by the growing proliferation of federated learning (FL) in edge environments, we present the first systematic characterization of transport-layer breaking points in FL systems operating under conditions of highly constrained…

网络与互联网体系结构 · 计算机科学 2026-05-06 Mike Mwanje , Okemawo Obadofin , Theophilus Benson , Joao Barros

Hybrid structures formed between organic molecules and inorganic quantum dots can accomplish unique photophysical transformations by taking advantage of their disparate properties. The electronic coupling between these materials is…

We provide experimental and theoretical evidence for a novel type of pressure-induced insulator-metal transition characterized by site-selective delocalization of the electrons. M\"ossbauer spectroscopy, X-ray diffraction and electrical…

In this paper, we propose a novel decentralized framework for optimizing the transmission strategy of Irregular Repetition Slotted ALOHA (IRSA) protocol in sensor networks. We consider a hierarchical communication framework that ensures…

信息论 · 计算机科学 2018-05-21 Eleni Nisioti , Nikolaos Thomos

Quantum transduction is essential for the future hybrid quantum networks, connecting devices across different spectral ranges. In this regard, molecular modulation in hollow-core fibers has proven to be exceptional for efficient and tunable…

量子物理 · 物理学 2025-04-11 Tasio Gonzalez-Raya , Arturo Mena , Miriam Lazo , Luca Leggio , David Novoa , Mikel Sanz

Relaying over power line communication (PLC) channels can considerably enhance the performance and reliability of PLC systems. This paper is dedicated to study and analyze the energy efficiency of multi-hop cooperative relaying PLC systems.…

信号处理 · 电气工程与系统科学 2018-08-02 Khaled M. Rabie , Bamidele Adebisi , Haris Gacanin , Galymzhan Nauryzbayev , Augustine Ikpehai

The theory of energy transfer dynamics of a pair of donor and acceptor molecules located in the plasmonic hot spots is developed by means of the master equation approach and the electromagnetic Green's tensor technique. A nonlocal effect…

光学 · 物理学 2017-12-29 Jun Ren , Tian Chen , Bo Wang , Xiangdong Zhang