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Empirical evidence is presented which contradicts the established interpretation of the intraspecific genetic variability as the adaptive potential of the species: the uniform evolutionary tempo across the life kingdom, species…

种群与进化 · 定量生物学 2011-01-04 Anastassia M. Makarieva , Victor G. Gorshkov

Recent microbial experiments suggest that enhanced genetic drift at the frontier of a two-dimensional range expansion can cause genetic sectoring patterns with fractal domain boundaries. Here, we propose and analyze a simple model of…

种群与进化 · 定量生物学 2008-12-12 Oskar Hallatschek , David R. Nelson

Mixture models are one of the most widely used statistical tools when dealing with data from heterogeneous populations. This paper considers the long-standing debate over finite mixture and infinite mixtures and brings the two modelling…

统计方法学 · 统计学 2019-04-23 Raffaele Argiento , Maria De Iorio

Switching dynamical systems provide a powerful, interpretable modeling framework for inference in time-series data in, e.g., the natural sciences or engineering applications. Since many areas, such as biology or discrete-event systems, are…

机器学习 · 计算机科学 2021-09-30 Lukas Köhs , Bastian Alt , Heinz Koeppl

The study of density-dependent stochastic population processes is important from a historical perspective as well as from the perspective of a number of existing and emerging applications today. In more recent applications of these…

最优化与控制 · 数学 2017-09-26 Yingdong Lu , Mark Squillante , Chai Wah Wu

We consider the dynamics of a 1D system evolving according to a deterministic drift and randomly forced by two types of jumps processes, one representing an external, uncontrolled forcing and the other one a control that instantaneously…

统计力学 · 物理学 2019-10-30 Mark S. Bartlett Amilcare Porporato Lamberto Rondoni

Scale independence is a ubiquitous feature of complex systems which implies a highly skewed distribution of resources with no characteristic scale. Research has long focused on why systems as varied as protein networks, evolution and stock…

物理与社会 · 物理学 2016-02-08 Laurent Hébert-Dufresne , Antoine Allard , Jean-Gabriel Young , Louis J. Dubé

We consider the stochastic ranking process with space-time dependent unbounded jump rates for the particles. We prove that the joint empirical distribution of jump rate and scaled position converges almost surely to a deterministic…

概率论 · 数学 2017-01-02 Tetsuya Hattori

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However,…

种群与进化 · 定量生物学 2016-09-23 Jaime Ashander , Luis-Miguel Chevin , Marissa L. Baskett

Growing efforts to measure fitness landscapes in molecular and microbial systems are premised on a tight relationship between landscape topography and evolutionary trajectories. This relationship, however, is far from being straightforward:…

种群与进化 · 定量生物学 2019-12-13 Matteo Smerlak

We consider a class of generalized long-range exclusion processes evolving either on $\mathbb Z$ or on a finite lattice with an open boundary. The jump rates are given in terms of a general kernel depending on both the departure and…

概率论 · 数学 2024-10-24 Patrícia Gonçalves , Julian Kern , Lu Xu

We investigate the survivor distributions of a spatially extended model of competitive dynamics in different geometries. The model consists of a deterministic dynamical system of individual agents at specified nodes, which might or might…

定量方法 · 定量生物学 2015-11-24 J. M. Luck , A. Mehta

Biological populations are subject to fluctuating environmental conditions. Different adaptive strategies can allow them to cope with these fluctuations: specialization to one particular environmental condition, adoption of a generalist…

种群与进化 · 定量生物学 2017-09-27 Andreas Mayer , Thierry Mora , Olivier Rivoire , Aleksandra M. Walczak

Positive density-dependence occurs when individuals experience increased survivorship, growth, or reproduction with increased population densities. Mechanisms leading to these positive relationships include mate limitation, saturating…

种群与进化 · 定量生物学 2019-02-12 Sebastian J. Schreiber

This paper motivates the use of random-bridges -- stochastic processes conditioned to take target distributions at fixed timepoints -- in the realm of generative modelling. Herein, random-bridges can act as stochastic transports between two…

机器学习 · 计算机科学 2026-04-07 Stefano Goria , Levent A. Mengütürk , Murat C. Mengütürk , Berkan Sesen

We are interested in populations in which the fitness of different genetic types fluctuates in time and space, driven by temporal and spatial fluctuations in the environment. For simplicity, our population is assumed to be composed of just…

概率论 · 数学 2018-12-21 Niloy Biswas , Alison Etheridge , Aleksander Klimek

We develop a formalism to discuss the properties of GENERIC systems in terms of corresponding Hamiltonians that appear in the characterization of large-deviation limits. We demonstrate how the GENERIC structure naturally arises from a…

偏微分方程分析 · 数学 2020-03-31 Richard C. Kraaij , Alexandre Lazarescu , Christian Maes , Mark A. Peletier

We consider a stochastic individual-based model of adaptive dynamics for an asexually reproducing population with mutation. Biologically motivated by the influence of seasons or the variation of drug concentration during medical treatment,…

概率论 · 数学 2025-03-26 Manuel Esser , Anna Kraut

Standard Gaussian graphical models (GGMs) implicitly assume that the conditional independence among variables is common to all observations in the sample. However, in practice, observations are usually collected form heterogeneous…

统计方法学 · 统计学 2010-01-26 Abel Rodriguez , Alex Lenkoski , Adrian Dobra

We prove that deterministic motion in dissipative systems emerges as a strict geometric attractor of contact flow, not a statistical approximation. Building on the contact geometry of stochastic vector bundles, we develop time-dependent…

数学物理 · 物理学 2026-05-13 D. Y. Zhong