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The denaturation transition which takes place in circular DNA is analyzed by extending the Poland-Scheraga model to include the winding degrees of freedom. We consider the case of a homopolymer whereby the winding number of the double…

统计力学 · 物理学 2011-11-22 Amir Bar , Alkan Kabakçıoğlu , David Mukamel

A mesoscopic model for heterogeneous DNA denaturation is developed in the framework of the path integral formalism. The base pair stretchings are treated as one-dimensional, time dependent paths contributing to the partition function. The…

软凝聚态物质 · 物理学 2011-07-12 Marco Zoli

We analyze a semi-infinite one-dimensional random walk process with a biased motion that is incremental in one direction and long-range in the other. On a network with a fixed hierarchy of long-range jumps, we find with exact…

统计力学 · 物理学 2015-06-03 Lauren A. Ball , Alfred C. K. Farris , Stefan Boettcher

A classification of critical behavior is provided in systems for which the renormalization group equations are control-parameter dependent. It describes phase transitions in networks with a recursive, hierarchical structure but appears to…

统计力学 · 物理学 2015-05-12 Stefan Boettcher , Trent Brunson

The renormalization group has played an important role in the physics of the second half of the twentieth century both as a conceptual and a calculational tool. In particular it provided the key ideas for the construction of a qualitative…

凝聚态物理 · 物理学 2009-10-31 Giovanni Jona-Lasinio

Percolation refers to an interesting class of problems related to the properties of disordered systems, usually formulated in terms of objects randomly placed on an underlying lattice or continuum. Despite the simplicity of the setup, most…

统计力学 · 物理学 2022-02-22 Abraham Levitan

Two different models exhibiting self-organized criticality are analyzed by means of the dynamic renormalization group. Although the two models differ by their behavior under a parity transformation of the order parameter, it is shown that…

凝聚态物理 · 物理学 2009-10-22 Albert Diaz-Guilera

Concerning renormalisation group theory applied to phase transitions, we examine the value of positive numerical and analytical evidence, the divergent short-wavelength behaviour of classical free fields and the absence of UV-divergences in…

统计力学 · 物理学 2007-05-23 Reinhold Brueckner

The onset of intermediate states (denaturation bubbles) and their role during the melting transition of DNA are studied using the Peyrard-Bishop-Daxuois model by Monte Carlo simulations with no adjustable parameters. Comparison is made with…

统计力学 · 物理学 2009-11-10 S. Ares , N. K. Voulgarakis , K. O. Rasmussen , A. R. Bishop

The vulcanization transition - the crosslink-density-controlled equilibrium phase transition from the liquid to the amorphous solid state - is explored analytically from a renormalization group perspective. The analysis centers on a minimal…

无序系统与神经网络 · 物理学 2009-10-31 Weiqun Peng , Paul M. Goldbart

We investigate solitons in Peyrard-Bishop model of DNA molecule using Renormalization group methods which provide a systematic way for perturbation analysis. Small amplitude expansion is carried out in both the continuous and discrete…

生物物理 · 物理学 2020-04-23 Filip Blaschke , Ondřej Nicolas Karpíšek , Petr Beneš

A theory for thermomechanical behavior of homogeneous DNA at thermal equilibrium predicts critical temperatures for denaturation under torque and stretch, phase diagrams for stable B--DNA, supercoiling, optimally stable torque, and the…

软凝聚态物质 · 物理学 2015-05-27 Cristiano Nisoli , A. R. Bishop

We discuss a renormalization procedure for random tensor networks, and show that the corresponding renormalization-group flow is given by the Hamiltonian vector flow of the canonical tensor model, which is a discretized model of quantum…

高能物理 - 理论 · 物理学 2015-04-15 Naoki Sasakura , Yuki Sato

Diffusion models represent a class of generative models that produce data by denoising a sample corrupted by white noise. Despite the success of diffusion models in computer vision, audio synthesis, and point cloud generation, so far they…

统计力学 · 物理学 2025-01-17 Kanta Masuki , Yuto Ashida

Double stranded DNA chain is known to have nontrivial elasticity. We study the effect of this elasticity on the denaturation profile of DNA oligomer by constraining one base pair at one end of the oligomer to remain in unstretched (or…

软凝聚态物质 · 物理学 2007-05-23 Navin Singh , Yashwant Singh

Discrete amorphous materials are best described in terms of arbitrary networks which can be embedded in three dimensional space. Investigating the thermodynamic equilibrium as well as non-equilibrium behavior of such materials around second…

统计力学 · 物理学 2013-12-10 Eser Aygun , Ayse Erzan

Percolation in a scale-free hierarchical network is solved exactly by renormalization-group theory, in terms of the different probabilities of short-range and long-range bonds. A phase of critical percolation, with algebraic…

无序系统与神经网络 · 物理学 2009-12-14 A. Nihat Berker , Michael Hinczewski , Roland R. Netz

We extend approximate next-to-next-to-leading order results for top-pair production to include the semi-leptonic decays of top quarks in the narrow-width approximation. The new hard-scattering kernels are implemented in a fully differential…

高能物理 - 唯象学 · 物理学 2015-06-22 A. Broggio , A. S. Papanastasiou , A. Signer

The denaturation of the double helix is a template for fundamental biological functions such as replication and transcription involving the formation of local fluctuational openings. The denaturation transition is studied for heterogeneous…

生物大分子 · 定量生物学 2014-06-03 Marco Zoli

We present an analytical strong-disorder renormalization group theory of the quantum phase transition in the dissipative random transverse-field Ising chain. For Ohmic dissipation, we solve the renormalization flow equations analytically,…

强关联电子 · 物理学 2008-06-23 J. A. Hoyos , Thomas Vojta