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We prove the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile Assembly Model, when restricted to…

计算复杂性 · 计算机科学 2015-07-31 Pierre-Étienne Meunier , Damien Regnault

In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla, Liu, and Seeman to…

We prove a result which strongly hints at the computational weakness of a model of tile assembly that has so far resisted many attempts of formal analysis or positive constructions. Specifically, we prove that, in Winfree's abstract Tile…

计算复杂性 · 计算机科学 2016-10-28 Pierre-Étienne Meunier , Damien Regnault

We introduce a partial decidability protocol for the Wang tiling problem (which is the prototype of undecidable problems in combinatorics and statistical physics) by constructing a suitable mapping from tilings of finite squares of…

统计力学 · 物理学 2025-12-10 Fabrizio Canfora , Marco Cedeno

The impact of confinement on self-assembly of particles interacting with short-range attraction and long-range repulsion (SALR) potential is studied for thermodynamic states corresponding to local ordering of clusters or layers in the bulk.…

软凝聚态物质 · 物理学 2014-11-17 Jakub Pękalski , Alina Ciach , Noé G. Almarza

The algorithmic self-assembly of shapes has been considered in several models of self-assembly. For the problem of \emph{shape construction}, we consider an extended version of the Two-Handed Tile Assembly Model (2HAM), which contains…

计算几何 · 计算机科学 2016-08-18 Austin Luchsinger , Robert Schweller , Tim Wylie

The ability to design and synthesize ever more complicated colloidal particles opens the possibility of self-assembling a zoo of complex structures, including those with one or more self-limited length scales. An undesirable feature of…

We use computational modeling to investigate the assembly thermodynamics of a particle-based model for geometrically frustrated assembly, in which the local packing geometry of subunits is incompatible with uniform, strain-free large-scale…

软凝聚态物质 · 物理学 2021-09-06 Botond Tyukodi , Farzaneh Mohajerani , Douglas M. Hall , Gregory M. Grason , Michael F. Hagan

Algorithmic self-assembly occurs when disorganized components autonomously combine to form structures and, by their design and the dynamics of the system, are forced to follow the execution of algorithms. Motivated by applications in…

计算几何 · 计算机科学 2023-05-05 Daniel Hader , Matthew J. Patitz

If particles interact according to isotropic pair potentials that favor multiple length scales, in principle a large variety of different complex structures can be achieved by self-assembly. We present, motivate, and discuss a conjecture…

软凝聚态物质 · 物理学 2018-11-07 Erdal C. Oğuz , Aleksandar Mijailović , Michael Schmiedeberg

We prove that the abstract Tile Assembly Model (aTAM) of nanoscale self-assembly is intrinsically universal. This means that there is a single tile assembly system U that, with proper initialization, simulates any tile assembly system T.…

数据结构与算法 · 计算机科学 2012-04-10 David Doty , Jack H. Lutz , Matthew J. Patitz , Robert T. Schweller , Scott M. Summers , Damien Woods

Perhaps the two most significant theoretical questions about the programming of self-assembling agents are: (1) necessary and sufficient conditions to produce a unique terminal assembly, and (2) error correction. We address both questions,…

数据结构与算法 · 计算机科学 2009-09-16 Aaron Sterling

We consider staged self-assembly systems, in which square-shaped tiles can be added to bins in several stages. Within these bins, the tiles may connect to each other, depending on the glue types of their edges. Previous work by Demaine et…

数据结构与算法 · 计算机科学 2017-01-03 Erik D. Demaine , Sándor P. Fekete , Christian Scheffer , Arne Schmidt

In geometrically frustrated assemblies, equilibrium self-limitation manifests in the form of a minimum in the free energy per subunit at a finite, multi-subunit size which results from the competition between the elastic costs of…

软凝聚态物质 · 物理学 2023-08-15 Michael Wang , Gregory Grason

Self-assembly in the laboratory can now yield `information-rich' nanostructures in which each component is of a distinct type and has a defined spatial position. Ensuring the thermodynamic stability of such structures requires…

生物物理 · 物理学 2016-03-22 Stephen Whitelam

Majumder, Reif and Sahu have presented a stochastic model of reversible, error-permitting, two-dimensional tile self-assembly, and showed that restricted classes of tile assembly systems achieved equilibrium in (expected) polynomial time.…

计算复杂性 · 计算机科学 2009-08-04 Aaron Sterling

We use computer simulations to study a model, first proposed by Wales [1], for the reversible and monodisperse self-assembly of simple icosahedral virus capsid structures. The success and efficiency of assembly as a function of…

生物大分子 · 定量生物学 2010-02-24 Iain G. Johnston , Ard A. Louis , Jonathan P. K. Doye

In this work, we study the thermo-mechanical behavior of metallic structures designed to significantly change shape in response to thermal stimuli. This behavior is achieved by arranging two metals with different coefficient of thermal…

应用物理 · 物理学 2020-06-30 Semih Taniker , Paolo Celli , Damiano Pasini , Douglas Hofmann , Chiara Daraio

Wang tile based representation of a heterogeneous material facilitates fast synthesis of non-periodic microstructure realizations. In this paper, we apply the tiling approach in numerical homogenization to determine the Representative…

应用物理 · 物理学 2018-04-02 Martin Doškář , Jan Zeman , Daniela Jarušková , Jan Novák

In micro- and nano-scale systems, particles can be moved by using an external force like gravity or a magnetic field. In the presence of adhesive particles that can attach to each other, the challenge is to decide whether a shape is…

计算几何 · 计算机科学 2022-06-16 Jakob Keller , Christian Rieck , Christian Scheffer , Arne Schmidt